Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq1923 836 0.0 seq2655 399 2e-106 >seq1923 Length=3841 Score = 836 bits (926), Expect = 0.0 Identities = 756/946 (80%), Gaps = 10/946 (1%) Strand=Plus/Minus Query 155935 GCCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGACC 155994 || ||||||||||||||| | ||||| |||||| ||||| |||||||| ||| Sbjct 2082 GCGATCAACTGGAACCGCATCCAGGACGACAAGGACCTCGAGGTCTGGAACCGTCTGGTG 2023 Query 155995 AACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGGCACCAG 156054 ||||||||||||||||| |||||| | ||| ||||||| ||| ||||||||||| || | Sbjct 2022 AACAACTTCTGGCTGCCCGAGAAGGTGCCGCTGTCCAACGACATCCAGTCGTGGAACACG 1963 Query 156055 CTGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCTGGAC 156114 |||||| | | |||| | | || |||||||| |||||||| |||||| | |||||| Sbjct 1962 CTGACCCCGCAGGAGCAGACGCTGACGATGCGGGTCTTCACCGGTCTGACGCTCCTGGAC 1903 Query 156115 ACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCGCACGAG 156174 ||||||||||||||||| || ||||||||||| ||||| || || ||||||||||||||| Sbjct 1902 ACCATCCAGGGCACCGTGGGGGCGGTCTCGCTGATCCCCGATGCGATCACCCCGCACGAG 1843 Query 156175 GAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCGTGCACGCACGCAGCTACTCGAAC 156234 ||||||||||||||||||||||| ||||||||| |||||||| ||||||||| Sbjct 1842 GAGGCGGTGTACACCAACATCGCCTTCATGGAGTCGGTGCACGCCAAGAGCTACTCGTCG 1783 Query 156235 ATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCGGAGGAG 156294 |||||||||||||||||||| || |||||||| | ||| |||||||||||| |||| Sbjct 1782 ATCTTCTCGACGCTGTGCTCGACGCCCGAGATCGATGACGCCTTCCGCTGGTCGACGGAG 1723 Query 156295 AACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAACGGTGACGACCCG 156354 |||| ||||| ||||||||||| |||||| | ||||||| ||| ||||| || Sbjct 1722 AACGAGAACCTTCAGAAGAAGGCGCGGATCGTCATGGACTACTACCGCGGCGACGAGCCC 1663 Query 156355 CTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGCTTCTAC 156414 |||||||||||||| || || || ||||| ||| |||||||||||| ||||||||| Sbjct 1662 CTCAAGCGCAAGGTGGCATCGACCCTGCTCGAGTCGTTCCTGTTCTACTCGGGCTTCTAC 1603 Query 156415 CTGCCGATGTTCTGGTCGTCGCGAGGC-AAGCTCACCAACACCGCCGACATGATCCGGCT 156473 |||||| ||| |||||||||| |||| ||||| || ||||| |||||||| ||||| || Sbjct 1602 CTGCCGCTGTACTGGTCGTCGA-AGGCGAAGCTGACGAACACGGCCGACATCATCCGCCT 1544 Query 156474 CATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAGGGCCT 156533 ||||||||| |||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1543 CATCATCCGCGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGCGCGGTCT 1484 Query 156534 GGAGAAGGAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGAGCTGCTGTT 156593 |||| | | | |||| | ||||| ||||||||||| | | ||| |||| Sbjct 1483 GGAGCTGCTGGACGAGGCGGCGCGCCAGGACATCAAGGACTACGCGTTCTCGCTCCTGTA 1424 Query 156594 CGAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCCACCGGCCAGAC 156653 |||||||| |||||||||| ||||||||||||| |||||||||| ||| | || Sbjct 1423 CGAGCTGTACGACAACGAGATCCAGTACACCCAGGATCTCTACGACGAGGTCGGTCTCAC 1364 Query 156654 CGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACCTGGGCTA 156713 ||||||||||||||||||||| | ||||||| ||||||||| ||| |||||| ||||| Sbjct 1363 CGAGGACGTGAAGAAGTTCCTTCACTACAACGCCAACAAGGCGCTGATGAACCTCGGCTA 1304 Query 156714 CGACGCGCTGTTCAGCCGCAGCGACTG----CGACGTCAACCCGGCCATCCTGAGCGCGC 156769 ||| ||| ||||| ||| ||||| | |||||| |||||||| |||||| |||| Sbjct 1303 CGAGGCGATGTTC--CCG--GCGACCGTCACCGACGTGAACCCGGCGATCCTGTCGGCGC 1248 Query 156770 TGTCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTACGTCA 156829 | ||||| | ||||||||||||||||||||| ||||||||| ||||||||| Sbjct 1247 TCTCGCCGAACGCCGACGAGAACCACGACTTCTTCAGCGGGTCGGGCTCGTCGTACGTCA 1188 Query 156830 TGGCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCTGATG 156875 | | ||||| || | ||||| ||||||||||||||||||||||| Sbjct 1187 TCGGCAAGGCCGTCGCGACCGAGGACGACGACTGGGACTTCTGATG 1142 >seq2655 Length=2512 Score = 399 bits (442), Expect = 2e-106 Identities = 349/434 (80%), Gaps = 0/434 (0%) Strand=Plus/Plus Query 152886 ATCTTCGAGAGATTCACCGACCGCGCCCGTCGCGTCTGCGTCCTCGCCCAAGAGGAAGCG 152945 || |||||||||||||||||||| |||||||| || || ||||||||||| || ||| Sbjct 27 ATGTTCGAGAGATTCACCGACCGAGCCCGTCGTGTGGTTGTGCTCGCCCAAGAAGAGGCG 86 Query 152946 CGCATGCTCAACCATGCGTACATCGGCACCGAGCATCTGCTGCTCGGGCTGGTCCACGAG 153005 ||||||||||| ||||||||||||||||| | |||||||||||| |||||||| Sbjct 87 AAGATGCTCAACCACAACTACATCGGCACCGAGCACATCCTGCTCGGGCTGATCCACGAG 146 Query 153006 GGCGAGGGCGTAGCCGCCAAGGCGCTGCAGGCGCTCGACATCAACCTGGAGGAGGTGCGT 153065 ||||||||||| ||||| |||||||| || | |||| |||| || || | ||||| Sbjct 147 GGCGAGGGCGTCGCCGCGAAGGCGCTCGAGTCCCTCGGCATCTCGCTCGACGCCGTGCGC 206 Query 153066 GCCGAGGTCGAGGAGATCATCGGCCACGGCCAGCAGGCACCCACCGGGCACATCCCGTTC 153125 | ||||| |||| ||||||||||| || |||||| |||||||| |||||||| ||| Sbjct 207 GAGCAGGTCCAGGACATCATCGGCCAGGGGCAGCAGCAGCCCACCGGCCACATCCCCTTC 266 Query 153126 ACCGACCGCTCCAAGCGCGTCCTGGAGCTGTCGCTGCGCGAGGCGCTGCAGCTCGGCCAC 153185 || ||| | ||| || || ||||||||||||||||| ||||||||||| |||||| Sbjct 267 ACGCCGCGCGCGAAGAAGGTGCTCGAGCTGTCGCTGCGCGAAGCGCTGCAGCTGGGCCAC 326 Query 153186 AACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATCCGCGAGGGTGAGGGCGTGGGC 153245 |||||||||||||||||||| |||| || | ||| ||||||||||| |||||||| | Sbjct 327 AACTACATCGGCACCGAGCACATCCTCCTCGGCCTCATCCGCGAGGGCGAGGGCGTCGCA 386 Query 153246 TGCCAGGTGCTGGTGAAGCGCGGCGCGGAGCTGACCAAGGTCCGCCAGGTGGTCATCCAG 153305 ||||||||| || |||| |||||| || |||| |||||| |||||| |||||||||| Sbjct 387 GCCCAGGTGCTCGTCAAGCTCGGCGCCGACCTGAACAAGGTGCGCCAGCAGGTCATCCAG 446 Query 153306 CTGCTGTCCGGGTA 153319 ||||| || || || Sbjct 447 CTGCTCTCGGGCTA 460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526559175001680