Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq185 100 2e-16 seq302 98.7 8e-16 >seq185 Length=40125 Score = 100 bits (110), Expect = 2e-16 Identities = 181/265 (68%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 108336 CGTAGCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAA 108395 ||| ||||| | || | ||||| |||| || || | ||| | ||| | |||||| Sbjct 20688 CGTGGCCGGCCTGGGCATCACGGCGGGCGCGCACCGCCTCTGGTCGCACCGCGGCTACAA 20629 Query 108396 GGCCACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACAC 108455 ||||| ||| | | |||||||| ||| ||| |||| |||| || || Sbjct 20628 GGCCAAGCTGCCGCTGCGCGTGTTCCTCATGCTGTGCAACTCGATGGCCTTCGAGGGTAC 20569 Query 108456 CATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGA 108515 |||| | ||| || ||| ||| | || ||||||||| ||| |||||||||||||| Sbjct 20568 CATCTTCGATTGGTCGCGCGACCACCGCGTGCACCACAAGGGCTCGGACACGACGGCCGA 20509 Query 108516 CCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAA 108575 ||| |||||| | | | || ||| ||||||||| |||| ||| ||||| || ||| Sbjct 20508 CCCGCACAACTCGGAGCGCGGCCTCTTCTTCTCGCACATGGGCTGGATCATGGTGCGCAA 20449 Query 108576 GGACCCCGACGTGATCTCGGCCGGT 108600 | || ||||| | |||||||| Sbjct 20448 GCACAAGAACGTGCGCGCGGCCGGT 20424 >seq302 Length=29880 Score = 98.7 bits (108), Expect = 8e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| | ||| ||| | || |||||||||||||| |||||||| || Sbjct 18118 CACCATCTTCCACTGGAGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGACCGC 18177 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 |||||| |||||| | | | || |||| ||| ||||| |||| |||||| || | | Sbjct 18178 CGACCCGCACAACTCGGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTCCTGGTCAA 18237 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGG 108599 ||||||||| | ||| || |||||| Sbjct 18238 GAAGGACCCCAAGGTGGTCAAGGCCGG 18264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381745073631096