Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq36 154 1e-32 seq678 136 4e-27 seq257 136 4e-27 seq174 113 4e-20 seq961 98.7 9e-16 seq4140 96.9 3e-15 >seq36 Length=76722 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | ||||||||| || || || ||||| |||| | Sbjct 56627 CCACCACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 56568 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || || ||| |||||| |||||||| ||||| || Sbjct 56567 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 56508 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| |||||||||||| | |||| |||| || ||||| | ||| || Sbjct 56507 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG-TCGATGGAGTCCGAAGGCTCCAC 56449 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| |||| || || || || ||||||||| Sbjct 56448 GTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 56400 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | |||| |||||| || | |||||||| || || || ||||| |||| Sbjct 56856 TCCGCCGCGAAGACGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 56797 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| || || ||||| || || ||| |||||| |||||||| ||||| || Sbjct 56796 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGG 56737 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 |||||||||||||| |||||||||||| | |||| |||| || ||||| | ||| | Sbjct 56736 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG-TCGATGGAGTCCGAAGGCTCCA 56678 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | || ||||| |||| || || || || ||||||||| Sbjct 56677 CGTCCAGCGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 56628 >seq678 Length=15758 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | |||||| || || || || ||||| |||| || |||||| Sbjct 15092 CGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 15151 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | |||| |||||||| || || || ||||| |||||| Sbjct 15152 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 15211 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||||||| | |||| |||| | ||||| ||| || || | ||| | Sbjct 15212 TCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCACGTCCAAGGTGAT 15270 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| ||||| |||| ||| || ||||| ||||||||| Sbjct 15271 CGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 15307 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | ||||||||| || || || ||||| |||| || |||||| Sbjct 15320 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 15379 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | |||| |||||||| || || || ||||| |||||| Sbjct 15380 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 15439 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||||||| | |||| |||| | ||| | ||| || || | ||| | Sbjct 15440 TCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCTGACGGCTCCACGTCCAAGGTGAT 15498 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| ||||| |||| ||| || || || ||||||||| Sbjct 15499 CGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 15535 Score = 123 bits (136), Expect = 2e-23 Identities = 156/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | ||||||||| || || || ||||| |||| || |||||| Sbjct 15548 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 15607 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | |||| |||||||| || || || ||||| |||||| Sbjct 15608 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 15667 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||||||| | |||| |||| | ||| | ||| || || | ||| | Sbjct 15668 TCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCTGACGGCTCCACGTCCAAGGTGAT 15726 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCT 127109 ||| ||||| |||| ||| || || || |||| Sbjct 15727 CGTCTTGCCCGTCAAAGTCTTCACGAAGATCT 15758 >seq257 Length=32862 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | ||||||||| || || || ||||| |||| || |||||| Sbjct 129 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 188 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | |||| |||||||| || || || ||||| |||||| Sbjct 189 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 248 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||||||| | |||| |||| | ||| | ||| || || | ||| | Sbjct 249 TCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCTGACGGCTCCACGTCCAAGGTGAT 307 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| ||||| |||| ||| || ||||| ||||||||| Sbjct 308 CGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 344 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | |||||| || || || || ||||| |||| || |||||| Sbjct 357 CGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 416 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | |||| |||||||| || || || ||||| |||||| Sbjct 417 TCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 476 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||||||||||| | |||| |||| | ||| | ||| || || | ||| | Sbjct 477 TCCTGAATTTTCTGCTTCACGTTG-TCGATCGAGTCTGACGGCTCCACGTCCAAGGTGAT 535 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| |||| ||| || || || |||||||| Sbjct 536 CGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 571 >seq174 Length=41746 Score = 113 bits (124), Expect = 4e-20 Identities = 336/511 (66%), Gaps = 13/511 (3%) Strand=Plus/Plus Query 145701 CGAGGCCGCCGCTTCGGCGTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCG 145760 ||||||| | |||| ||| ||||||||||| | || | || ||| | ||| Sbjct 19151 CGAGGCC-CTGCTT----GTCCACGGTGAACTGGATGGCGTCGGCTTTCGGGCGTCCGCG 19205 Query 145761 CAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA- 145819 || ||||||||||| ||||||||| |||| ||| | ||| ||||| ||| || || Sbjct 19206 CATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAG 19265 Query 145820 --TGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAA 145877 || | | | ||| || ||||| | | || || || |||||||| |||| | Sbjct 19266 CTTG--CTAAT-CGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTA 19322 Query 145878 AGGAGCC-CGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTT 145936 || ||| ||||| || | || ||| | || | ||| || || ||||| | || | Sbjct 19323 -GGCGCCACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCT 19381 Query 145937 TAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGG 145996 | | |||||||| || | || || | | |||||||| || ||| || | Sbjct 19382 TGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTCAG 19441 Query 145997 CCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGA 146056 ||| || | |||||||| || || || | ||| || || | || |||| |||| Sbjct 19442 CCAGAATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGA 19501 Query 146057 GATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGG 146116 | |||| ||| || | | ||||| || || || ||||| | |||| ||| | Sbjct 19502 GGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACG 19561 Query 146117 TGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGT 146176 || ||||||||| ||||||||||| || | ||||| ||||||| || || ||||| Sbjct 19562 TGTACGGCTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCG 19621 Query 146177 ACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||||| || | ||||| | | |||||| Sbjct 19622 GAGCCACGAGGAGCGAGTTGCGGATGCCGTG 19652 >seq961 Length=10404 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 6632 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6691 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||| ||||||||| |||||||||||||| | || Sbjct 6692 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 6751 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 6752 ATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 6811 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 6812 ATCTGCATG 6820 >seq4140 Length=1496 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/169 (74%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT- 47470 || |||||| | | | | ||| | |||||||||| || || |||||||||||||| || Sbjct 1089 GGCATGAACTCTGCGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCT-GTA 1147 Query 47471 -TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 ||| | |||| ||||| ||| || |||| || ||||| | ||| | | | Sbjct 1148 CTCACTGGGTGCATCC-AAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGATATGA 1206 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||| |||||||||||||||| |||||||||||||| ||||| || Sbjct 1207 TCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 1255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475465381134160