Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq939 147 6e-31 >seq939 Length=10715 Score = 147 bits (162), Expect = 6e-31 Identities = 194/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 8842 GAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATC 8901 |||||| | || | || ||||| || || | | || ||||| || | || ||| | Sbjct 3436 GAGGTCTCGGAGTTCTCCCGCGCGCTGAAGCTTCTCGCCAAGGAGCTGCAGGTGCCGGTG 3495 Query 8902 ATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATG 8961 ||||||||||||||||| || || || | ||| | ||| | ||||| ||| | | || Sbjct 3496 ATCGCGCTGTCGCAGCTGAACCGTGGTCCTGAGCAGCGCGCCGACAAGAAGCCGGCCCTG 3555 Query 8962 TCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTAC 9021 ||||| || ||||||||||| |||||||||||||||||||| || || || | || || Sbjct 3556 TCCGACCTCCGCGAGTCGGGATCGATCGAGCAGGATGCCGACATGGTCGTCCTGCTCCAC 3615 Query 9022 CGCGATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCG 9081 || || | || || | | ||||||| || ||| |||||| ||||| | ||| Sbjct 3616 CGTGAGGCGGCGTACGAGCGCGACAGCCCACGCGCCGGCGAGGCCGACCTCATCGTGGCG 3675 Query 9082 AAGCAGCGAAACGGGCCGATTGGCACCGT 9110 ||||| |||||||| |||| | |||||| Sbjct 3676 AAGCACCGAAACGGCCCGACCGACACCGT 3704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127536574474764