Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4140 311 9e-80 seq36 159 3e-34 seq257 145 8e-30 seq678 140 3e-28 seq961 118 1e-21 seq37 95.1 1e-14 >seq4140 Length=1496 Score = 311 bits (344), Expect = 9e-80 Identities = 552/795 (69%), Gaps = 10/795 (1%) Strand=Plus/Minus Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 ||||| | ||||||||||||||||||||| || ||||| | | || | || | | Sbjct 1144 AGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATC 1085 Query 132781 AGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 || ||| || |||| ||| | | ||| ||| |||| || | || ||||| || Sbjct 1084 AGCTCCACGGGGAGCGAGTCGCTCACGAACTCGT-GCTCAATCACCACAGCGTCACGCAC 1026 Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCG-TTG--CACCAAATGCTTGAACATCAAGCA 132896 ||| | | | |||| | | | |||| | ||| |||||| | | | |||| | ||| Sbjct 1025 GAT--CGCGTGCACGCGGCTCTC-CGGCAGCTTGTTCACCAACTTCGAGTACATGAGGCA 969 Query 132897 AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCC 132956 || ||||| |||| ||||||||||| | ||||| ||||| ||| ||| || Sbjct 968 CGCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACC 909 Query 132957 GGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGAC 133016 |||||||||||||| || |||||||| || |||| | ||| ||||| ||||| | Sbjct 908 AGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAAT 849 Query 133017 GCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGAT 133076 |||||| ||||| ||||| |||| ||| ||||| | | | | | | | Sbjct 848 GCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACACGAGGGTCACA 789 Query 133077 CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 ||| |||||||| |||||| | | |||||||| ||||| |||||||| || Sbjct 788 CCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAG 729 Query 133137 CAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTC 133196 ||| | ||||| | | | | ||| |||||||| || ||| |||| || Sbjct 728 CAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACACCTC 669 Query 133197 CGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTG 133256 |||||| | |||||| |||||||| || |||||||| ||||| || ||||| ||| || Sbjct 668 CGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACTTG 609 Query 133257 CACTTCTTGAGCGAAACGC-TCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGA 133315 ||| || | ||| | ||| |||| || ||||| ||||||||||||||||| |||| Sbjct 608 CACCTCATTGCTGAAGTTCATCG-CCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGA 550 Query 133316 AAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGC 133375 | || || ||||||||||||||||| |||||||||||||| ||| | | ||||||| Sbjct 549 AGAATGCTAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTCAGGTTCCCCCAGTCCT 490 Query 133376 GCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGT 133435 | ||| | |||||||| ||||||| | ||||| ||||||||||| || || |||| Sbjct 489 TCAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGT 430 Query 133436 ACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGC 133495 |||| ||||| ||| | || || || || | ||| |||||| ||||| || Sbjct 429 ACATCTGCCACACGTCGTGCTCCTGGATCGGGAACAGCACGAACCGGTTCGGGTTCTCCA 370 Query 133496 GCAACAGCGGCTCCG 133510 || | |||||||| Sbjct 369 CCAGGAACGGCTCCG 355 >seq36 Length=76722 Score = 159 bits (176), Expect = 3e-34 Identities = 178/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 || || ||||| || ||||| || ||| | |||||||| |||||||| | ||||| ||| Sbjct 56395 AAGAACATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAG 56454 Query 38298 GCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | | ||| | | | |||| | || | ||||||| ||||| ||||| || || | Sbjct 56455 CCTTCGGACTCCATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCC 56513 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 |||||| ||||| || || | ||| ||||| |||||||| |||| ||||| || | ||| Sbjct 56514 CGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGA 56573 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| ||||| | |||||||| |||||||||||| || | || ||| Sbjct 56574 CTACAACATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGC 56628 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | |||||||| |||||||| | ||||| ||| | | Sbjct 56629 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 56688 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | |||| | || | ||||||| ||||| ||||| || || ||||||| Sbjct 56689 GACTCCATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCA 56747 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 56748 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 56807 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||||||||||| | | ||||| Sbjct 56808 CATCCAGAAGGAGTCTACACTGCACTTGGTGCTGCGTCTTCGCGGCGG 56855 >seq257 Length=32862 Score = 145 bits (160), Expect = 8e-30 Identities = 175/233 (75%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || | |||||||| || |||||| | ||||| ||| | Sbjct 574 AAGATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCG 515 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-G 38358 | ||| | | |||| | || | ||||| | ||||| || || || |||||| | Sbjct 514 TCAGACTCGATCGACAACG-TGAAGCAGAAAATTCAGGACAAGGAAGGCAT-CCCGCCTG 457 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| || |||| ||| ||||| ||||| || |||| ||||| || | ||||| Sbjct 456 ACCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACT 397 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| |||||| | |||||||| ||||||||||| || | |||||| Sbjct 396 ACAACATCCAGAAGGAATCTACGCTGCACCTGGTGCTGCGTCTGCGTGGCGGC 344 Score = 134 bits (148), Expect = 1e-26 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | |||||||| || |||||| | ||||| ||| | | Sbjct 343 ATGCAGATCTTTGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCA 284 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | ||||| | ||||| || || || |||||| |||| Sbjct 283 GACTCGATCGACAACG-TGAAGCAGAAAATTCAGGACAAGGAAGGCAT-CCCGCCTGACC 226 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| ||| ||||| ||||| || |||| ||||| || | |||||||| Sbjct 225 AGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACA 166 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| | |||||||| ||||||||||| || | |||||| Sbjct 165 ACATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGCGGC 116 >seq678 Length=15758 Score = 140 bits (154), Expect = 3e-28 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| || |||||| | ||||| ||| | | Sbjct 15534 ATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCA 15475 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | ||||| | ||||| || || || |||||| |||| Sbjct 15474 GACTCGATCGACAACG-TGAAGCAGAAAATTCAGGACAAGGAAGGCAT-CCCGCCTGACC 15417 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| ||| ||||| ||||| || |||| ||||| || | |||||||| Sbjct 15416 AGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACA 15357 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| | |||||||| ||||||||||| || | |||||| Sbjct 15356 ACATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGCGGC 15307 Score = 138 bits (152), Expect = 1e-27 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | |||||||| || |||||| | ||||| ||| | | Sbjct 15306 ATGCAGATCTTTGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCG 15247 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | ||||| | ||||| || || || |||||| |||| Sbjct 15246 GACTCGATCGACAACG-TGAAGCAGAAAATTCAGGACAAGGAAGGCAT-CCCGCCTGACC 15189 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| ||| ||||| ||||| || |||| ||||| || | |||||||| Sbjct 15188 AGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACA 15129 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| |||||| | |||||||| ||||||||||| || | ||||| Sbjct 15128 ACATCCAGAAGGAATCTACGCTGCACCTGGTGCTGCGTCTGCGTGGCGG 15080 Score = 132 bits (146), Expect = 5e-26 Identities = 167/224 (75%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 || ||||| || || | |||||||| || |||||| | ||||| ||| | | ||| Sbjct 15756 ATCTTCGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCAGACTCG 15697 Query 38310 GTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGC 38367 | | |||| | || | ||||| | ||||| || || || |||||| ||||| |||| Sbjct 15696 ATCGACAACG-TGAAGCAGAAAATTCAGGACAAGGAAGGCAT-CCCGCCTGACCAGCAGC 15639 Query 38368 GGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCC 38427 | || |||| ||| ||||| ||||| || |||| ||||| || | |||||||||||||| Sbjct 15638 GCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAACATCC 15579 Query 38428 AAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 | ||||| | |||||||| ||||||||||| || | |||||| Sbjct 15578 AGAAGGAGTCTACGCTGCACCTGGTGCTGCGTCTGCGTGGCGGC 15535 >seq961 Length=10404 Score = 118 bits (130), Expect = 1e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| | ||||| ||| | || Sbjct 6819 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTAGAGCCGTCC 6760 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||||| | | | | || | ||||||| ||||| || || ||||| | ||||| Sbjct 6759 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 6700 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 6699 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 6640 Query 38424 ATCCAAAAGG 38433 ||||| |||| Sbjct 6639 ATCCAGAAGG 6630 >seq37 Length=75809 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 36088 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 36029 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 || || ||||||||||| || ||||| ||| |||||||| ||||||||||| || | Sbjct 36028 ACTCTTTCGGACTACAACATTCAGAAGGAGAGC-ACGCTGCACCTGGTGCTGCGTCTGCG 35970 Query 38465 AGGCGG 38470 || || Sbjct 35969 TGGTGG 35964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500135543378560