Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq625 365 6e-96 seq316 125 9e-24 seq1179 120 4e-22 seq313 98.7 1e-15 seq118 98.7 1e-15 >seq625 Length=16992 Score = 365 bits (404), Expect = 6e-96 Identities = 846/1256 (67%), Gaps = 27/1256 (2%) Strand=Plus/Plus Query 6887 TTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTT 6946 ||||| | ||||| ||| || || | ||| || | | |||||| | || || || Sbjct 4432 TTCTTGGCTGGAACCGTGGTGTTGCGCGGGATCAGCTTGGTCATGACTCCGCCAGCCGTC 4491 Query 6947 TCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTG-AACAGATTCGTT 7005 || | ||||||||||| || | |||||||| || | |||||| || ||| || Sbjct 4492 TCCAAGCCAAGAGACAGCGGCGCCACGTCCAGTAGCAGCAGGTCCTGCAACTTGGACGA- 4550 Query 7006 CCCTTCAC--CCGTTAAG-ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATC 7062 | ||| ||| | || ||||| || || || || || ||||| || | || || || Sbjct 4551 CGAGTCATGGCCGCTCAGGATGGCCGCCTGCACTGTAGCACCGTACGCTATGGCTTCGTC 4610 Query 7063 GGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGAT-AACATTTGTTGAA 7121 ||||| || | || || | |||||||| ||| | || ||| |||| || || | Sbjct 4611 CGGGTTGATGGACTTGAAGAGCTTCTTACCGTTGAAAAAGTC-GATCAACAACTGCTGCA 4669 Query 7122 TTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGA 7181 |||||||| || ||||| || || || | || | || ||||| | | | | |||| Sbjct 4670 CCTTCGGGATACGAGTCGAGCCGCCCACTAGCACCACCTCGTTCACCTG-GCTCT-TCGA 4727 Query 7182 T--CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCAT 7239 ||| |||||||| || | | || || ||||| || || || || || Sbjct 4728 CAGCTTCGAGTCTCGTAGAACCTGCGCCACTGGGTCCATTGTCTTGCGAAAGAATTCACC 4787 Query 7240 ACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAA 7299 ||| || ||||| || || || || ||||||| | | |||||| || || || | Sbjct 4788 ACAAAGATCCTCGAACCGCGCGCGCGTAATGGTAGAGTTGAAATCGACACCATCCAGCAG 4847 Query 7300 CGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACA 7359 ||| ||||| || ||| | ||| || | | || | || ||||| || ||||| || Sbjct 4848 CGAGTCAATCTCGATGTACGCTTGCGCAGACATCGACAGTGTACGCTTGGCACGCTCGCA 4907 Query 7360 CGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACG 7419 |||||| || | ||| || || || |||| ||| | | ||||| || ||| || || Sbjct 4908 CGCCGTACGCAGACGCCGCAGCGCGCGCGAGTTCACCGTCATATCCTTGCGATGCTTGCG 4967 Query 7420 TTTAAACTCTT---CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAA 7476 || || |||| || |||| | ||| | || | ||||| ||||| || |||| Sbjct 4968 CTTGAATTCTTGCACAAAGAACT--CGACG-AGGCGGTTGTCGAAGTCTTCGCCGCCCAG 5024 Query 7477 GTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGA 7536 ||| || || || ||||| || || || || ||||| || ||||||| ||| | ||| Sbjct 5025 GTGCGTGTCGCCAGCGGTGGCCTTCACCTCGAAGATGCCGTCTTCAATAGTTAGAAGCGA 5084 Query 7537 AACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTT 7596 ||||| || || || || |||||||| || || || ||||| || | | || Sbjct 5085 CACATCGAAGGTGCCGCCGCCCAGGTCGAAGATCAGCACGTTGTGCTCTCCACCCTT--- 5141 Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 ||| || |||||||| || ||||| || || || || || || || ||||| || ||| Sbjct 5142 CTTGTCCAGACCGTAGGCAATAGCGGCGGCTGTCGGCTCGTTGATGATACGCAGCACGTT 5201 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 || |||||||| | |||||||| ||||| ||||| ||||| ||||| |||||||| Sbjct 5202 CAAACCAGCAATGACACCGGCATCTTTGGTCGCCTGTCGCTGCGAGTCGTTGAAGTAGGC 5261 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776 ||| ||||| || || |||| | | || | |||||| | || | |||||||| || Sbjct 5262 CGGCACCGTCACCACTGCGTTCTTCACCTGCTTACCAATGTAAGCCTCCGCGATCTCGCG 5321 Query 7777 CATTTTGGTAAGAACCATCGATGAAATCTCTTC-AGCCGCAAACTGTTTCGT-TTCACCG 7834 ||| ||| || ||||| || || ||||| || || | ||| || | | ||||| Sbjct 5322 CATCTTGACCAGCACCATGGACGAGATCTCCTCGGGCTGGAAA--GTCACCTGCTCACCT 5379 Query 7835 TTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAA 7894 || || | || | | || |||| | | | ||| | || ||| ||| ||| Sbjct 5380 TTGAACTGCACCACCACTTCCGGCTTATTCTCCGGACCTCGAGCCACTTTAAACGGCCAG 5439 Query 7895 TCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCA 7954 | | || || || || | |||| | ||||| | ||||| | |||||| || Sbjct 5440 TGCCTGATGTCCGACTGCACTTCAGGGTCGGTGAACTTGCGCCCGATCAAACGCTTGACA 5499 Query 7955 TCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGA 8014 ||||| || ||||| | | ||||||||| |||||||| |||||||| |||||||| Sbjct 5500 TCAAACACCGTGTTGTGCGCGTTCATGGCCACCTGGTTCTTGGCCGCGTCGCCGATAAGG 5559 Query 8015 CGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTC 8074 || || | ||||| || || ||||| || || ||||| || || || |||||||| Sbjct 5560 CGCTC---CGTGTCCGTGAAGGCCACGTAGGACGGTGTCGTGCGGTTGCCCTGGTCGTTG 5616 Query 8075 GCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCC 8130 || || || || ||||||||||| ||||| ||||| |||||||| || || || || Sbjct 5617 GCGATGATCTCCACGCGGTCGTTCTGCCACACGCCCACGCACGAGTAGGTCGTGCC 5672 >seq316 Length=29302 Score = 125 bits (138), Expect = 9e-24 Identities = 450/696 (65%), Gaps = 17/696 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || |||| ||| || || || ||| || || || || | || Sbjct 13666 TCGAAGTCCTCGCCGCCCAGGTGCGTGTCGCCGTTGGTGGCCAGCACCTCGAACACGCCA 13607 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || ||| | || || ||||| || || ||||||||||||||||| | || ||| Sbjct 13606 CCGTCGATGGCCAGCAGCGTCACATCGAAGGTGCCACCACCCAGGTCAAACACCAGCACG 13547 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | ||| | | | ||||| || | ||||| || || || || ||||| || || Sbjct 13546 TTCTTCTCGCCCTGTGCCTTCTTGTCAATGCCGTAGGCAATGGCAGCGGCCGTGGGCTCG 13487 Query 7637 TTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || || || | || | | || ||||| || || | || || || || || || || Sbjct 13486 TTGATGATGCGCTGCACCG-TGAGTCCAGCGATGGTGCCGGCGTCCTTGGTAGCCTGACG 13428 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || | ||||| |||||||| || ||||| ||||| ||||| || | |||| Sbjct 13427 CTGGGCGTCGTTGAAGTAGGCGGGCACCGTCACGACGGCGTCGAATACCTCGCGGCCGAT 13368 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 || |||| ||| | ||||| ||||| || ||||| | || | ||| || | ||| Sbjct 13367 GTATCCCTCCGAGATCTGCTTCATCTTGGTGAGCACCATGGCCGAGACCTCCTCGGGCGC 13308 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 |||| | | || || || | ||||| | || | || || ||| | | Sbjct 13307 GAACTCGCGCTTCTCGCCCTTGACCTCAACCTGGATGAAAGGCTT-GCCG--TCCTTGTT 13251 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| | || |||| | ||| | ||| || ||| | ||| |||| | Sbjct 13250 GATGATCTCGTACGGCAGCAGCTTCTTGTCGGACTGCACCGACTTGTCGTTGTACTTGCG 13191 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||||| || ||||| | || || | || || | ||||| |||| | |||||||| Sbjct 13190 ACCGATGAGGCGCTTGACGTCGAACAGCGTCTTCTCCGGGTTGATGGTGGCCTGGTTCTT 13131 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATT---TTCCGTAAACGCGACGTACGATGGGGT 8052 ||| |||| ||||| || || || | || ||| ||||||||||||| || || Sbjct 13130 CGCGCCGTCGCCGATCAGGCGCTCGTCGTTCGAGTCC---CACGCGACGTACGAGGGCGT 13074 Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTAC---GCGGTCGTTTTGCCAGACGCC 8109 | || || || |||||||| || || || || || |||| || | ||| ||| Sbjct 13073 GATACGGTTGCCCTGGTCGTTGGCGATGATCTCCACCTTCTGGTCCTTGT---AGATGCC 13017 Query 8110 GACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 |||||||| || || || || | || || ||||| Sbjct 13016 CACGCACGAGTAGGTCGTGCCCAGGTCGATGCCGAT 12981 >seq1179 Length=7767 Score = 120 bits (132), Expect = 4e-22 Identities = 448/699 (64%), Gaps = 14/699 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || ||||| |||| ||| || || || | || | ||||| || ||||| || Sbjct 5702 TCGAAGTCCTCACCGCCCAGGTGCGTGTCACCGCCCGTGGACTTGACCTCGAAGATGCCG 5643 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | | ||| ||||| || ||||| ||||||||||| || ||||| ||| Sbjct 5642 TTCTCGATCGACAGGATCGACACATCGAAGGTACCGCCACCCAGGTCGAAGATGAGCACG 5583 Query 7577 TT------CGTATCGTC---GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCC 7627 || ||| |||| | | |||| | || || |||||||||| || || ||| Sbjct 5582 TTGCAGGCCGTGCCGTCCGTGCCGGCGTTCGTGTCCAGGCCGTACGCGAGGGCAGCGGCC 5523 Query 7628 GTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGT 7686 || || || || || ||||| ||| || ||||||||| || | | || || || || Sbjct 5522 GTGGGCTCGTTGATGATACGCTTGAC-GTCCAGGCCAGCGATCGAACCGGCGTCCTTGGT 5464 Query 7687 CGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTT 7746 || || || ||| ||||| |||||||| || || || || || || | ||| | Sbjct 5463 CGACTGACGCTGCTGGTCGTTGAAGTAGGCGGGCACGGTGACCACAGCCTGGCTGATGCT 5404 Query 7747 CTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTC 7806 || || || | | || || | || ||||| || ||||| || || ||||| Sbjct 5403 CTGGCCCAGGAAGGCCTCAGCCGTCTCCTTCATGCGCAGCAGCACCATGGACGAGATCTC 5344 Query 7807 TTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGC 7866 || | | || ||| | ||||| || || || || || |||| | || || | Sbjct 5343 CTCGGGGGTGAAGCTCTTCTTGTCACCCTTGAACTCCACCTCGATCAGGACCTTGTCGTC 5284 Query 7867 AGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGA 7926 |||| | | | | | | | | || || | | ||| | ||| Sbjct 5283 GTCACCCTCCTTGATCGTGAAGGGGAAGTGCTTGGCGTCCTTCTTCACCACCTCGTCGCT 5224 Query 7927 AAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGT 7986 || | | ||||| | |||||| || || || || ||||| ||| ||| ||| | Sbjct 5223 GAAGCTGCGGCCGATGATACGCTTGGCGTCGAACACCGTGTTGGTGGCGTTACCGGCGGC 5164 Query 7987 TTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGA 8046 ||| |||| || || || ||||| ||||| || | || | || ||||| |||| Sbjct 5163 CTGGATCTTGGCGGCCTCACCGATGAGACGCTC---GCTCTCGTTGAAAGCGACCCACGA 5107 Query 8047 TGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGAC 8106 |||||||| || || || | | ||| || || || || || || ||| | ||| || Sbjct 5106 GGGGGTCGTGCGGTTGCCCTCGCTGTTGGCGATGATCTCCACCTGGCCGTCCTTCCACAC 5047 Query 8107 GCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 ||| |||||||| ||||| || || | ||||| ||||| Sbjct 5046 GCCCACGCACGAGTACGTCGTGCCCAGGTCAATGCCGAT 5008 >seq313 Length=29412 Score = 98.7 bits (108), Expect = 1e-15 Identities = 182/265 (69%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 7534 CGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTT 7593 ||| ||||| || ||||| ||||||||||| || | | | | | | ||||| | || Sbjct 12670 CGACACATCGAAGGTACCGCCACCCAGGTCGAAGACGGCGATGACCTTGCCGTCGGCCTT 12611 Query 7594 GTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653 || | || ||||| || | || || ||||| || ||||| || ||||| || Sbjct 12610 GTCCATA------CCGTAGGCCAGGGCAGCGGCCGTGGGCTCATTGATGATACGGAGCAC 12557 Query 7654 GTTCAGGCCAGCAATAGTTGCCG-CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 || ||| || || || |||||| | || || || || || || ||||| ||||| |||| Sbjct 12556 GTCCAGACCGGCGATC-TTGCCGGCGTCCTTGGTGGCCTGACGCTGCGAGTCGTTGAAGT 12498 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 ||||||| || || ||||| || | |||| ||| || || | || ||| | | Sbjct 12497 AGGCCGGCACGGTGACGACGGCCTGGGTGATGGGCTTGCCCAGGAAGCCGTCGGCGGTCT 12438 Query 7773 CTTTCATTTTGGTAAGAACCATCGA 7797 | ||||| ||||| || ||||| || Sbjct 12437 CCTTCATCTTGGTGAGCACCATGGA 12413 >seq118 Length=50062 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 184209 TCGCGTCACGCACGTTCTTACATTTACCCCTAAGCGGAAAAACACCGTAATGATCACGAC 184268 |||| |||||||||||| | ||| || | ||| ||||| |||||||| |||||||| | Sbjct 34738 TCGCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACCGTACTGATCACGTC 34797 Query 184269 CAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAA 184328 |||| |||| |||||||| | || |||| || ||||||||||| || || | ||| | Sbjct 34798 CAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCCTCAGTCAAAATCA 34857 Query 184329 GAGTACACTTAC 184340 | | |||| || Sbjct 34858 GCGAGCACTCAC 34869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635085490545560