Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq961 114 3e-20 seq174 98.7 2e-15 >seq961 Length=10404 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | || || | || || ||||||||||| || |||||||| Sbjct 6632 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6691 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || ||||||||||| ||||| || ||||| |||||||| || ||| Sbjct 6692 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 6751 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||| |||| || || || || || || | ||||| || |||| || || || || Sbjct 6752 ATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 6811 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 6812 ATCTGCAT 6819 >seq174 Length=41746 Score = 98.7 bits (108), Expect = 2e-15 Identities = 188/276 (68%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 |||||||| | ||| ||||||| ||||||||| | ||| ||| || || | ||| Sbjct 20438 TTCTACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAGCGAACGGCAAGTGG 20379 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 ||||||||||| |||||||| || || ||||| | || | || |||||||||| Sbjct 20378 AGCCTTTTCTGCCCCAATGAGGCCCCCGGACTCTACGAGTGCTGGGGCGACGAGTTCGAG 20319 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGC---CAAAAAGGTCGTGAAGGCCCAA 160765 ||||| || || | ||||| || ||||| | || ||| | | || || ||||| Sbjct 20318 ACTCTGTACGAGAAGTACGAGAAGGAGGGGCGCGCGCGCAAGACGATC---AATGCCCAG 20262 Query 160766 GAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATAC 160825 | |||||| |||||| | ||| || | ||| ||| |||| || || ||| Sbjct 20261 CAGCTGTGGTTCGCCATCCTGGACGCGCAGATTGAGACGGGCGTGCCGTTCATGCTGTAC 20202 Query 160826 AAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861 ||||| || | |||||| |||||| ||||| Sbjct 20201 AAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAAC 20166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109396891426553