Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq961 96.9 2e-15 seq678 95.1 8e-15 seq257 93.3 3e-14 seq36 93.3 3e-14 >seq961 Length=10404 Score = 96.9 bits (106), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 11/198 (6%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| |||||||| || | || | || || ||||| || ||||| || || Sbjct 6632 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6691 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG----- 34908 || || |||||||| |||| | || |||||||| || ||||| ||||| Sbjct 6692 AGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 6751 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 ||||| ||| |||| || || || | || ||||| || ||||| || ||||||| Sbjct 6752 ATGCTGTCGGA----CGGC-TCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCA 6806 Query 34969 CAAAGATCTGCAT-ATTC 34985 ||||||||||||| |||| Sbjct 6807 CAAAGATCTGCATGATTC 6824 >seq678 Length=15758 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || | || | || || ||||| || || || || Sbjct 15115 TTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAA 15174 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| |||| | || |||||||| ||| ||||| || ||| Sbjct 15175 AATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTT 15234 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | ||||| || | ||| || || | ||| || || || ||||| | ||||||||| Sbjct 15235 GTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCAC 15294 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 15295 AAAGATCTGCAT 15306 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || || || || Sbjct 15344 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAA 15403 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | || |||||||| ||| ||||| || ||| Sbjct 15404 ATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTG 15463 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | ||| || || || ||||| | ||||||||| Sbjct 15464 TCGATCGAGTCTGACGGCTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACG 15523 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 15524 AAGATCTGCAT 15534 >seq257 Length=32862 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || || || || Sbjct 153 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAA 212 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | || |||||||| ||| ||||| || ||| Sbjct 213 ATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTTG 272 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | ||| || || || ||||| | |||||||||| Sbjct 273 TCGATCGAGTCTGACGGCTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCACA 332 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 333 AAGATCTGCAT 343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || | || | || || ||||| || || || || Sbjct 380 TTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAA 439 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| |||| | || |||||||| ||| ||||| || ||| Sbjct 440 AATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTCACGTT 499 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | ||||| || | ||| || || | ||| || || || ||||| | ||||||||| Sbjct 500 GTCGATCGAGTCTGACGGCTCCACGTCCAAGGTGATCGTCTTGCCCGTCAAAGTCTTCAC 559 Query 34970 AAAGATCTGCATATT 34984 ||||||||||| || Sbjct 560 GAAGATCTGCATCTT 574 >seq36 Length=76722 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| ||||| || | || | || ||| Sbjct 56837 ACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCC 56778 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || |||||||| |||| | ||||||||||| Sbjct 56777 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGG 56718 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || ||||| || ||| | || || || | ||| || || | || ||||| || Sbjct 56717 ATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTG 56658 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 56657 CCCGTCAACGTCTTCACGAAGATCTGCAT 56629 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || | || | || ||| Sbjct 56609 ACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCC 56550 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || |||||||| |||| | ||||||||||| Sbjct 56549 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGG 56490 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || ||||| || ||| | || || || | ||| || || | || ||||| || Sbjct 56489 ATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGTCTTG 56430 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 ||||| | |||||||| ||||||||||| ||| Sbjct 56429 CCCGTCAACGTCTTCACGAAGATCTGCATGTTC 56397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324610023383352