Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_016435.1 Length=65766 Score E Sequences producing significant alignments: (Bits) Value seq1626 87.8 8e-13 >seq1626 Length=4816 Score = 87.8 bits (96), Expect = 8e-13 Identities = 112/155 (72%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 39920 CTCCATCGGGTCAATCTCGGTGATGCGCAGGAGGTAGCAGATCTCCGACCCGGCGGCCGA 39979 ||| | |||||| | ||||||||||||| | |||| || | |||||| ||| | || Sbjct 2333 CTCGAGCGGGTCGAGGTCGGTGATGCGCATGGCGTAGGCGACCATCGACCCCGCGCCGGA 2274 Query 39980 CCCGCGGCCGGGACCGACACCGATGGGGTCGGGGTGGTCCTTGGCAAACCGGACGAGGTC 40039 |||||||||||||| || | ||| | || ||||||||| | || || ||| Sbjct 2273 ACCGCGGCCGGGACCCACGCGGAT------GCCGTTGTCCTTGGCCCAGTTGATGAAGTC 2220 Query 40040 CGCGGTGACCAGGAAGTAGTCGCAGAACCCCTTCT 40074 ||| ||||||||||||| || ||||||| ||| Sbjct 2219 GGCGACGACCAGGAAGTAGCCGGGGAACCCCATCT 2185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210311124979473