Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq939 100 9e-17 >seq939 Length=10715 Score = 100 bits (110), Expect = 9e-17 Identities = 211/310 (68%), Gaps = 11/310 (4%) Strand=Plus/Plus Query 21212 GACTACCTGCAGCTGCTGGAGAGCTCCGGCAAG----TCCACTCGCACCG--AGGACGTC 21265 |||||||||||||| || |||| |||||| || | |||| | |||| ||| Sbjct 3385 GACTACCTGCAGCTCATGACGAGC---GGCAAGCGCGTCGAGTCGCGTCAGCAGGAGGTC 3441 Query 21266 AGCGACATGTCCCGCCAGTGCAAGCTGCTGGCGATGGAGCTTGGTATCCCCGTGATCGTG 21325 || | |||||| | ||||| || || | |||||| | || ||||||| | Sbjct 3442 TCGGAGTTCTCCCGCGCGCTGAAGCTTCTCGCCAAGGAGCTGCAGGTGCCGGTGATCGCG 3501 Query 21326 CTGTCGCAGCTCAACCGCTCCCTGGAGCAGCG-GCCGAACAAGCGACCGATGATGTCGGA 21384 ||||||||||| ||||| | |||||||| |||| ||||| ||| |||| || Sbjct 3502 CTGTCGCAGCTGAACCGTGGTCCTGAGCAGCGCGCCG-ACAAGAAGCCGGCCCTGTCCGA 3560 Query 21385 CCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTACCGCGA 21444 ||| |||||||| || ||||||||||||| ||||| || || | | | |||| || Sbjct 3561 CCTCCGCGAGTCGGGATCGATCGAGCAGGATGCCGACATGGTCGTCCTGCTCCACCGTGA 3620 Query 21445 CGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGATCATCGCGAAGCA 21504 | || ||| | | || | || | ||||| ||| || | ||| | |||||||| Sbjct 3621 GGCGGCGTACGAGCGCGACAGCCCACGCGCCGGCGAGGCCGACCTCATCGTGGCGAAGCA 3680 Query 21505 CCGCAACGGC 21514 ||| |||||| Sbjct 3681 CCGAAACGGC 3690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157099282377126