Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_018836.1 Length=50255 Score E Sequences producing significant alignments: (Bits) Value seq4945 260 4e-65 >seq4945 Length=1226 Score = 260 bits (288), Expect = 4e-65 Identities = 388/546 (71%), Gaps = 11/546 (2%) Strand=Plus/Minus Query 39433 GCGGCGTGAGTGAGGGGCATGTGCCGGGCGAAGTGCTCCTCCATCTGCTCGGCCGCCATC 39492 || ||||| |||||||||||| || ||| || ||||||||| |||||| |||| Sbjct 1170 GCCGCGTGGGTGAGGGGCATGAGCTCGGCCCAGAAGGCCTCCATCTTCTCGGCGCACATC 1111 Query 39493 TCGATCTCGCGCTGCGGGAACGAGGGGAACCGCGCGGCCTCCGCGGTGGTGCGCAGGCTC 39552 |||||||||||||||||||| |||||||| | |||| || |||||||||| | Sbjct 1110 TCGATCTCGCGCTGCGGGAAGGAGGGGAAGTGGCTCCCCTCGGCCTTGGTGCGCAGAGAC 1051 Query 39553 AGGAAGTGCATCAGGCTGCGGGCGTTGCAGGTGGCGAAGAACGAGGTGTACGTACCGACG 39612 ||||||| |||||| || || || |||| || | | ||||| ||| | | Sbjct 1050 AGGAAGTTCATCAGCGACCGCGCATTCATGGTGACGTACATCGAGGAGTAGATGTTCAGC 991 Query 39613 GGGAGGGCGGAGCGGGCGACCTCGCGGGCGATGCCGGCCCGGAGCATCACCTGGTAGGCG 39672 || || || ||||| ||||| || |||| ||| ||| |||||| |||||||| Sbjct 990 GGCAGCACGATACGGGCCACCTCTCGCGCGACGCCCGCCGCCAGCATCCGCTGGTAGGTC 931 Query 39673 TTCCAGGCGTGGCGGTAGCTCTCGCGGGCGACGTCCCGCATC----ACGTTGTACTGGAG 39728 | | |||| |||| || |||| || ||| | || || || ||| Sbjct 930 TCGAATGCGT--CGGTGGCGA-CGCGTCGCACC-CCCTCGTCGACGACCGCGTGCTGCTC 875 Query 39729 CGGGGTGCCCGGCTCGAACCGGTAGGCGCCAGGCTTGCCGACCTGCTGGAGGTTGCGGTC 39788 || ||||| || |||| |||||| || ||||| ||||||||| ||||||||||| Sbjct 874 GGGCGTGCCGGGGAGGAACTCGTAGGCTCCGGGCTTTCCGACCTGCACCAGGTTGCGGTC 815 Query 39789 CTCGGCCGGGATGTAGAACACCGGCTTCAACTCCCGGTAGCGCGCTGACTCCTCGTTGTA 39848 | | ||||||| |||||| |||||| || ||||||||| | | |||||||||||||| Sbjct 814 CGCCGCCGGGACGTAGAAGACCGGCCGCAGCTCCCGGTACCTGCCGGACTCCTCGTTGTA 755 Query 39849 ACTCCAGCCCACCCTGTGACGCATCCACTCACGGGCCACGAACATGGGGGCCTGGACCAG 39908 | || | | | ||| ||||| | || ||| ||||| || || ||||| || Sbjct 754 ---CGAGGCGATGCGGTGCCGCATGAATTCGCGGAAGACGAAGATCGGCGCCTGAACGTA 698 Query 39909 GAAGGTCATCGAGTTGTGCTCGAAGGGGCTGCCGTGCCGGTCCCGCATCAGGTAGTTGAT 39968 ||| ||||||||||||||||||||||| ||||| || || ||||| ||||||||||| Sbjct 697 GAACGTCATCGAGTTGTGCTCGAAGGGCGACCCGTGTCGATCGCGCATGAGGTAGTTGAT 638 Query 39969 CAGGCC 39974 |||||| Sbjct 637 CAGGCC 632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160683028762086