Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_019414.1 Length=51071 Score E Sequences producing significant alignments: (Bits) Value seq4945 298 2e-76 >seq4945 Length=1226 Score = 298 bits (330), Expect = 2e-76 Identities = 425/587 (72%), Gaps = 17/587 (3%) Strand=Plus/Minus Query 39258 CTCACGGGGCCACCCGGCCCTGCTTGTTGAAGGCGGTGTACGTGATGGGCATCAGGTCCG 39317 |||| ||||||||||| || | | ||||||| | || |||| |||||| || || | Sbjct 1202 CTCAGGGGGCCACCCGACCACCCGCGGTGAAGGCCGCGTGGGTGAGGGGCATGAGCTCGG 1143 Query 39318 CGAGGTGGTCCTCCATCTTCTCGGCGACCATCTCGATCTCGCGCTGCGGGAAGGAGGGGA 39377 | | | ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1142 CCCAGAAGGCCTCCATCTTCTCGGCGCACATCTCGATCTCGCGCTGCGGGAAGGAGGGGA 1083 Query 39378 ACTGAG--CGATGGCACTGATGGTGCGGAGTCCGAGGAAGTGCATCAGGCTGCGCGCGTT 39435 | || | | | || ||||||| || ||||||| |||||| ||||| || Sbjct 1082 AGTGGCTCCCCTCGGCCT--TGGTGCGCAGAGACAGGAAGTTCATCAGCGACCGCGCATT 1025 Query 39436 GCAGGTGGCGTAGAAGCTGGTGAAGATCCCGACCGGGAGGACCATGCGGGCCACCTCGCG 39495 |||| |||| | || | |||| | ||| || || || ||||||||||| || Sbjct 1024 CATGGTGACGTACATCGAGGAGTAGATGTTCAGCGGCAGCACGATACGGGCCACCTCTCG 965 Query 39496 GGCGATGCCGATCTCCAGCATCACCTCGTAGGAGCGGTACGCCT-GCTCGT-ACGCGTCA 39553 |||| ||| | |||||||| || ||||| | | || | | | | ||||||| Sbjct 964 CGCGACGCCCGCCGCCAGCATCCGCTGGTAGGTCTCGAATGCGTCGGTGGCGACGCGTCG 905 Query 39554 CTCATGG-CGGAGAGCGTCACCGCGTACTGCGAGGGCGAGCCGGGCGTGAACTGGTAGGC 39612 | | || || || ||||||| |||| ||||| |||||| ||||| |||||| Sbjct 904 CACCCCCTCGTCGA-CG--ACCGCGTGCTGCTCGGGCGTGCCGGGGAGGAACTCGTAGGC 848 Query 39613 GCCGGGCTTGCCCTTCTGCACCAGGTTCCGCTCATGGCCG--GGGGCGTAGAAGACGGGG 39670 |||||||| || |||||||||||| || || |||| ||| |||||||||| || Sbjct 847 TCCGGGCTTTCCGACCTGCACCAGGTTGCGGTCC--GCCGCCGGGACGTAGAAGACCGGC 790 Query 39671 CGGAGCTGCTTGTAGCGGCCCGACTCCTCGTTGTACGACCAGCCCGAGCGGTGGCGGAAG 39730 || |||| | ||| | ||| ||||||||||||||||| | | |||||| || | | Sbjct 789 CGCAGCTCCCGGTACCTGCCGGACTCCTCGTTGTACGA---GGCGATGCGGTGCCGCATG 733 Query 39731 AACTCGCGGGCCACGAAGACCGGCGCCTCGACGTAGAAGGTGAACGTGGTGTGCTCGAAG 39790 || |||||| ||||||| |||||||| |||||||| || | || | ||||||||||| Sbjct 732 AATTCGCGGAAGACGAAGATCGGCGCCTGAACGTAGAACGTCATCGAGTTGTGCTCGAAG 673 Query 39791 GGGCTGCCGTGCCGGTCCCGCATCAGGTAGTTGATCAGGCCCTGGTC 39837 || ||||| || || ||||| ||||||||||||||||||| ||| Sbjct 672 GGCGACCCGTGTCGATCGCGCATGAGGTAGTTGATCAGGCCCTTGTC 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163294043985414