Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq1626 1146 0.0 seq4945 187 8e-43 >seq1626 Length=4816 Score = 1146 bits (1270), Expect = 0.0 Identities = 1936/2769 (70%), Gaps = 87/2769 (3%) Strand=Plus/Minus Query 39020 GCGGGTTGCTCCGGTGGAGTCGAACGCACCGGCCTTGATCAAGGACTCGATGGCTCGCTT 39079 ||| || || ||| ||||||||||| || |||||||||| ||||||| || || || Sbjct 3878 GCGTGTCGCCCCGAGCGAGTCGAACGCGCCCGCCTTGATCAGCGACTCGACGGTCCGTTT 3819 Query 39080 GCTC---ACGGTCGCCTGAGTCGCTGCCTTC---AGGAAGTCCGGCAGGGAGGTGAACTT 39133 | | |||| | | || ||||| |||||||| | | ||| ||||| Sbjct 3818 GTTGGCGACGGGCACGGGAA------CCTTCGACAGGAAGTCGTGGAAGGACGTGAAGCG 3765 Query 39134 CCCC--CAGGCTTCCCGGAGTTCGGCGATCTCCGCGACCATGCCCTCGCCCACGTTCTTC 39191 | || | ||| ||| || |||| | |||||| | | || ||||| | Sbjct 3764 CGCCTCCTGGCGGGCCG-----CGACGATGGCGTCGACCACGTTAGCCCCGACGTTGCGC 3710 Query 39192 ACGGCGGTCAGCCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCTGTTCGAG 39251 || ||| ||| ||||||||||| || | | ||| || | ||| ||| | |||| Sbjct 3709 ACCGCGCCCAGTCCGAAGCGGATGTCTT---CGCCGACGGCCGCGAAGTAGCGGATCGAC 3653 Query 39252 ACCGACACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCGAGACTCGCCGAGGTACGTG 39311 || |||||| |||||||| ||| | ||||||||| || ||||| |||||| | Sbjct 3652 TCCCCCACGTCCGGCGGCAGCACCTTGATGCCCATGCGTCGGCACTCGTTGAGGTAGACG 3593 Query 39312 GCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGG 39371 |||||||||| |||| ||||||||| || || ||||||||||||||||| || Sbjct 3592 GCCATCTTGTCCTTGGAGTCGCCCACGCTCGTCAGGAGCGCCGCCATGTACTCGGCCGGA 3533 Query 39372 TAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCC 39431 || || | |||||| ||||||| | ||| | | ||||||||||| ||||||||||| Sbjct 3532 TAATGGGCCTTCAGGTACGCCGTCCAGTAGGACACCAGTCCGTACGCAGCCGAGTGCGCT 3473 Query 39432 TTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTGGATGGCACCG 39491 |||||||| |||||| | | ||| || | ||| | |||||||| |||| ||| || Sbjct 3472 TTGTTGAACGCGTAGTCCGAGAAGGGCAGCAGGATGTCCCACAGCGCCTTGATCGCCGAC 3413 Query 39492 TCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTG-GAAGTTCACGAACTCCTTGGCCAGAAC 39550 || |||||| ||||| | |||| | | |||| | || ||| |||| | || Sbjct 3412 TCGCCGTAGCCCCGCTCCTTCA-TCCCACCCGAGAAGCCCTCGTACTGCTTGTCGAG--- 3357 Query 39551 CTCGGGCTTCTTCTTG---CCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTA 39607 ||||| ||||||||| |||||||| ||||| || | ||| ||||| ||||| | | | Sbjct 3356 CTCGGACTTCTTCTTCTTCCCCATCGCACGGCGGAGAATGTCCGCCTGGCCGAGCGAGAA 3297 Query 39608 CCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGAGCTGGAAGGT 39667 || |||| |||||| | | | ||||||||||| |||||||| || | || | Sbjct 3296 GCCCGCCACCTTCTGCGCGATCGCCATGACCTGCTCCTGATAGATGATCAGGCCGTAGCT 3237 Query 39668 CGGGTCCAGGATCTCCGACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTG 39727 ||| ||||| || || | ||| | | |||||||||||||||||||| | |||| Sbjct 3236 GATGTCGAGGATGTCTTTGAGCGGCTCCTCGAGCTCGGGGTGGATCGGCGTGACCTCCTG 3177 Query 39728 CTGCCCGTTCTTACGGAGGGCGTAGTTCGTGTGAGACCCCACGCCCATCGGACCCGGACG 39787 ||| |||||||| |||||||||||||| |||| || | | ||||| || || || || Sbjct 3176 CTGACCGTTCTTGCGGAGGGCGTAGTTGATGTGGGAGTTCGCCCCCATGGGGCCGGGTCG 3117 Query 39788 GTACAGCGCGACGACGGCCGAGATGTCCTCGAAGTTGTCCGGCTTCAGCAGACGGAGCAG 39847 ||| ||||||| ||||||||| | ||||||||||||||| ||||| || || || ||||| Sbjct 3116 GTAGAGCGCGATGACGGCCGACACGTCCTCGAAGTTGTCGGGCTTGAGAAGTCGCAGCAG 3057 Query 39848 TGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAG 39907 |||||||||| || |||||||||||||| || ||| |||||||| | || ||||| Sbjct 3056 CGAGCGCATCGGACCACCGTCGAGCTGGAACACGCCGAGGGTGTCGCCACGGGTGAGCAG 2997 Query 39908 CTCGTACGTCGCGGGGTCGTCCAGGGGGATGTTCTCCAGGTCGACGTGCTCCCCACGGTT 39967 |||||||| ||| | |||||| || | || || ||| ||||||| | ||| || ||||| Sbjct 2996 CTCGTACGCCGCTGTGTCGTCGAGCGCGAGGTGCTCGAGGTCGAGCTCCTCGCCCCGGTT 2937 Query 39968 GAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTC 40027 | |||||||| |||| |||||| |||||||||||||| || |||||||||||||| Sbjct 2936 CATCCGGATGTTGTCGAGCGCGTCCGAGATGATCGTGAGGTTGCGCAGCCCGAGGAAGTC 2877 Query 40028 CATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGTCGAACTGCGTGATCGTCGCGCC 40087 |||||| | ||| ||||| || ||||| ||| |||||||||||||||| || || Sbjct 2876 CATCTTGATCAGACCCAGGGCTTCGCACGACGGATAGTCGAACTGCGTGACGATCTGTCC 2817 Query 40088 GTCCTGCGGTCGCACC-CAC-ACCGGGATGTGGTCGACCAGAGGCTCGTCGGACATGATC 40145 ||||||| |||| | || | ||||||| ||||| ||| ||||| |||||||| Sbjct 2816 GTCCTGC--TCGCGGCGCATGATCGGGATGATGTCGAGCAGGGGCTCCGACGACATGATG 2759 Query 40146 ACACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTTCGAGACCGAGCGCGGTGTCG 40205 || || || ||||| || ||| ||| || || || ||||| ||||| || |||| Sbjct 2758 ACGCCCGCGGCGTGAACGCCCCACTGACGCTTCAGCCCCTCGAGCCCGAGAGCCCGGTCG 2699 Query 40206 ATGACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCCGGATCTCGGCGGCCTCCTCG 40265 | |||| |||||| || || |||| | || || | | |||| |||| |||||| | | Sbjct 2698 AAGACCGTCTTGGCCTCGGGATCGGTGTCGATGAGGGCGCGGAACTCGCTGGCCTCTTTG 2639 Query 40266 TACCGAGGGTGCTCGGCGTTGAAGATCCCGTCGAGGGGCATCGAGTTGCCCATCACGTCG 40325 | || || |||| ||||| | | |||||| || ||||| |||||||| || | Sbjct 2638 AAGCGCGGATGCTGGGCGTCGTACATCCCGCTCAGCGGCATGTCCTTGCCCATGACCGCC 2579 Query 40326 GCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCT 40385 | ||| |||||||||||| ||| || | ||| || | ||||||| ||| || Sbjct 2578 GGCGGCATGGCCTTGGTCAGCCGCTCCCCCATGCTGAACGGGAAGCCCAGCACCCGGCCT 2519 Query 40386 GCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTG 40445 |||||||||| || | | |||||| ||||||||| |||||||||||||| Sbjct 2518 GCGTCCTTCAGAGCCTGCTTGGACTTGATGGTGCCGTACGTCACGATCTGCGCGACCCGC 2459 Query 40446 TCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATCGAAG 40505 |||| ||||||||| ||||||||| | |||||||||||| || |||||||| |||||| Sbjct 2458 TCGGAGCCGTACTTCTCGGTGACGTAGTCGATCACCTCGCCGCGGCGCCGGTCGTCGAAG 2399 Query 40506 TCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGT 40565 |||| |||| |||||||| || ||||| |||||||||||||| || |||||||| || Sbjct 2398 TCGACATCGAAGTCGGGCATCGAGACGCGGTCGGGGTTCAGGAAGCGTTCGAAGATCAGG 2339 Query 40566 CCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCC 40625 |||||||| |||||||||||||||||||| | | | |||||||||||| ||| || || Sbjct 2338 CCGTGCTCGAGCGGGTCGAGGTCGGTGATGCGCATGGCGTAGGCGACCATCGACCCCGCG 2279 Query 40626 GCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCC 40685 | || || || || || || || | || |||||| ||||| |||||| ||||||||| Sbjct 2278 CCGGAACCGCGGCCGGGACCCACGCGGATGCCGTTGTCCTTGGCCCAGTTGATGAAGTCG 2219 Query 40686 GCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGG 40745 |||||||| |||||||| ||||| |||||||| | ||| || || ||||||||| | Sbjct 2218 GCGACGACCAGGAAGTAGCCGGGGAACCCCATCTGCAGGATGATTCCGGTCTCGTACTCG 2159 Query 40746 AGCTGCTTGCCGTGCTCGTAGTCCG---TGCCGTTCGGGTACCGACGACGCGCGCCTCGG 40802 |||||||| | ||| ||||| |||||||||||||||| | | ||| Sbjct 2158 GCCTGCTTGC---GGACGTTGTCCGGGATGCCGTTCGGGTACCGGTAATGGAGGCCCTTC 2102 Query 40803 GCGACCTCGTCCTCGAACCAGGTGATCTCCGTGTGCCCCTCGGGCACCGGGAACTTCGGC 40862 ||||||| | | | |||| || ||| || | || |||||||| ||||| |||| Sbjct 2101 TCGACCTCCTTGACCAGCCAGCTGTCCTCGGTCTCACCGTCGGGCACGGGGAAGCGCGGC 2042 Query 40863 ATCAGGTT----CTCGTGCTCGAACATGCCGGTGGTGTCGACCATCTCGGCGATGTCCAG 40918 || ||| |||||| | |||| | | | | ||| |||||||||| || Sbjct 2041 ATGTAGTTGGCGCTCGTG-TTGAACTCGAC-CTCGCATCG-----CTCGGCGATGAGGAG 1989 Query 40919 CGTGGTCCGCATCCCCCACTCCCAGATGGGAGAGGAGTCGAT-GGCCGCCATCTCGGCGG 40977 |||| | || | | | || | || | ||| ||| |||| |||||| | Sbjct 1988 CGTGTT----GTCGCACGCCTCCGGGTGCTCGCGGA--AGATCTGCCG-CATCTCCTGCG 1936 Query 40978 CCGACTTCAGGTAGTACCCGGAGCCCTCGAAGCGGAAGCGGTGAGGGTTATCGAGCGTGG 41037 ||| ||| | |||||||||| ||| ||||| |||||||| |||| ||||| || | Sbjct 1935 CCGTCTTGACGTAGTACCCGTCGCCATCGAACTTGAAGCGGTTGGGGTCGTCGAGGGTCG 1876 Query 41038 TGCCGGTCTGGACGCACAGCAGTGCATCGTGAGCGACCGACTCCTCGGCGGT-GACGTAG 41096 || | ||| ||||||||||| || |||| ||| | | ||| | | ||| | |||| Sbjct 1875 ATCCCGACTGCACGCACAGCAGCGCCGCGTGCGCGTCGGCCTCGT-GCTGGTGGGTGTAG 1817 Query 41097 TGGGAATCGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGATCC 41156 ||||| ||||| || ||||| | | || |||| | |||| || ||| |||||| Sbjct 1816 TGGGAGTCGTTGGTCGCCACCAGCGGGATGCCGAGATCCTTCGAGATGCGGATCAGATCG 1757 Query 41157 TCGCGGACCCGGCGCTCGATCTCGATGCCGTGGTCCATGAGTTCGAGCAGGTAGCGCTCG 41216 ||||| |||||||| || ||||| ||||||| ||| | |||| ||| Sbjct 1756 GTCATCACCCGCCGCTCGATGGAGAGCCCGTGATCCATGATCTCGGCGAAGTAGTTCTCC 1697 Query 41217 CGACCCAGGATCTCCAGCCAGTCGCCAGCGGCCCTGACTGCCTCGTCGTACTGACCCAGG 41276 | || | ||| ||| | | || | || ||| || |||||||||| || || Sbjct 1696 CTGCCGAAGATGTCCTGGAACTCCGCGGCCGCCGCCCGCGCGGCGTCGTACTGGCCGAGA 1637 Query 41277 TTCAGCCTGGTCATGACTTCGCCACCAGGGCACCCCGTGGTTCCGATGATGCCCTCGCTG 41336 ||| | ||| || ||||| ||||||||||| || |||| | |||| || | Sbjct 1636 CGCAGTCGCGTCTGCACCTCGCCCGACGGGCACCCCGTCGTCGCGATCAGTCCCTTGCCG 1577 Query 41337 CACTCGGCGACGAGTTCCTTGTCGAGGCGGGCGTACTTGCCCATCAG--CCCCTCC-TGG 41393 | ||| |||||| ||| | || | |||| | || ||||||| || Sbjct 1576 TAGGTCTCGAGCAGTTCCCGGTCCATACGCG---GCTTG--AAGTAGTACCCCTCCATGC 1522 Query 41394 TAG-GAGCGAGACGTGATGCGCATGAGGTTGTGAAGGCCCGTCTTGTTCTG-CGCGAGCA 41451 | | | |||| ||| || | ||| ||||| | |||| || | || | | | || Sbjct 1521 TCGACAACGAG--CTGAGCCGGAAGAGATTGTGCATGCCCTCGGTGCTTTGACTCCA-CA 1465 Query 41452 TGGTCATGTGCGTGTACGCACCGTTACCCGACACGTCGTAACGCT--TCTGCTCGGGCGA 41509 | |||||||| |||||||| ||| || || || |||| |||| ||||||||| | Sbjct 1464 TCGTCATGTGGGTGTACGCGCCGGAGCCGGAGACATCGT--CGCTGCGCTGCTCGGGGGT 1407 Query 41510 CCCCCACTTGACCCGG---TCAAGGCTTCGCCTGTCGCCGGGGGCGACGTAGGCTTCCAT 41566 ||||||| || ||| | ||| || |||||||| ||||||||| || | Sbjct 1406 GCCCCACTGCACGCGGGATTTGTCGCTGCGGTGCGTGCCGGGGGTGACGTAGGCCTCGAG 1347 Query 41567 TCCCACGATGGGCTTGATGCCCGCTGCGGTGGCCTGCTTGAACAGCTCGTAGGCACCATG 41626 || | ||| |||||||||||||| || |||| ||| | | |||| | || | Sbjct 1346 ACCGATGATCGGCTTGATGCCCGCCGCCTTGGCGGCGTTGTAGAACTCGAACGCCGCGAA 1287 Query 41627 CATGTGGCCGTGGTCGGTCACTGCGATGGCTCGCATCCCCTGACGCTTGGCCTCGGCGAC 41686 ||| |||||||||||| || |||||||| |||| || | | | |||| | || Sbjct 1286 GGTGTTGCCGTGGTCGGTGACGGCGATGGCCGGCATGCCGTAA---TCGGCCGCCGCCTG 1230 Query 41687 CATCTT---CTCGATCTTGGCGTGCCCGTCGAGGAGCGAGAACTCTGAGTGGGCATGGAG 41743 | || | |||||||||| ||||||||| | |||| |||| ||| | || || Sbjct 1229 CGTCATGGCGCCGATCTTGGCCGCCCCGTCGAGCATCGAGTACTCGCTGTGCACGTGCAG 1170 Query 41744 ATGAACGAA 41752 |||||||| Sbjct 1169 GTGAACGAA 1161 >seq4945 Length=1226 Score = 187 bits (206), Expect = 8e-43 Identities = 376/549 (68%), Gaps = 23/549 (4%) Strand=Plus/Minus Query 36848 GTGAGGGGCATCGCGTCGGCGAAGACCTCCTCCATCTCGTCGGCCACCATCTCGATCTCC 36907 ||||||||||| ||||| ||| ||||||||| ||||| |||||||||||| Sbjct 1161 GTGAGGGGCATGAGCTCGGCCCAGAAGGCCTCCATCTTCTCGGCGCACATCTCGATCTCG 1102 Query 36908 TTCTGCGGGAAGGAGGGGTAG--GC-CGCCTCGTCGTTGATCGTGCGCAGCGAGAGGAAG 36964 |||||||||||||||| || || | ||||| | ||| |||||||| || |||||| Sbjct 1101 CGCTGCGGGAAGGAGGGGAAGTGGCTCCCCTCGGCCTTG---GTGCGCAGAGACAGGAAG 1045 Query 36965 TGCATCAGGCTGCGCGGGTTGCAGGTCGCGTAGTACGAGGTCATGAGGCCCACCGGCAGG 37024 | |||||| |||| || ||| |||| ||||| || | || |||||| Sbjct 1044 TTCATCAGCGACCGCGCATTCATGGTGACGTACATCGAGGAGTAGATGTTCAGCGGCAGC 985 Query 37025 ATCATCCGGGCCACCTCCTTGGCGATGCCGTGCAGGAGCATCGCCTCGTA---CTCGC-- 37079 | || ||||||||||| |||| ||| | |||||| || ||| |||| Sbjct 984 ACGATACGGGCCACCTCTCGCGCGACGCCCGCCGCCAGCATCCGCTGGTAGGTCTCGAAT 925 Query 37080 -CGTAGATCGCCTCGTACGTTCCCTGCATGACGTAGGGGACGAGGCCCTTCTGGAAGCTG 37138 ||| | | || || ||| ||| | | | ||||| | | ||| | Sbjct 924 GCGTCGGTGGCGACG--CGTC----GCACCCCCTCGTCGACGACCGCGTGCTGCTCGGGC 871 Query 37139 GTGCCAGGCTCGAAGGTGTACGCACCAGGCTTGCCCACCTGGACAAGGTTGCGCTCCTT- 37197 ||||| || ||| ||| || || ||||| || ||||| || |||||||| ||| Sbjct 870 GTGCCGGGGAGGAACTCGTAGGCTCCGGGCTTTCCGACCTGCACCAGGTTGCGGTCCGCC 811 Query 37198 GCCGGGCACGTAGAACGAGGGCTTCAGGGTCTTGTAGCGGCCCGACTCCTCGTTGTACGA 37257 |||||| |||||||| ||| ||| | ||| | ||| ||||||||||||||||| Sbjct 810 GCCGGG-ACGTAGAAGACCGGCCGCAGCTCCCGGTACCTGCCGGACTCCTCGTTGTACGA 752 Query 37258 CCACCCGGCGCGGTGGCGGAAGTGCTCGCGGGCCACGAAGATCGGGGCCTCGACGTAGAA 37317 || |||||| || | | |||||| ||||||||||| |||| |||||||| Sbjct 751 GG---CGATGCGGTGCCGCATGAATTCGCGGAAGACGAAGATCGGCGCCTGAACGTAGAA 695 Query 37318 GGTGAAGCTGCCGTGCTCGAAGGGCGAGCCGTGCCTGTCCCGCATGAGGTAGTTGATCAG 37377 || | | ||||||||||||||| ||||| | || |||||||||||||||||||| Sbjct 694 CGTCATCGAGTTGTGCTCGAAGGGCGACCCGTGTCGATCGCGCATGAGGTAGTTGATCAG 635 Query 37378 GCCCTCGTC 37386 ||||| ||| Sbjct 634 GCCCTTGTC 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163873202999412