Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq1923 863 0.0 >seq1923 Length=3841 Score = 863 bits (956), Expect = 0.0 Identities = 758/940 (81%), Gaps = 6/940 (1%) Strand=Plus/Minus Query 59266 GCCATCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTGACC 59325 || ||||||||||||||| || ||||||||||| || |||||||||||||| || Sbjct 2082 GCGATCAACTGGAACCGCATCCAGGACGACAAGGACCTCGAGGTCTGGAACCGTCTGGTG 2023 Query 59326 AACAACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGCACG 59385 ||||||||||||||||| |||||| | || | ||||||||||||| | | ||| |||| Sbjct 2022 AACAACTTCTGGCTGCCCGAGAAGGTGCCGCTGTCCAACGACATCCAGTCGTGGAACACG 1963 Query 59386 CTGACGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCTCGAC 59445 ||||| | | ||||| || |||||||||||||||||||| |||||| | || ||| Sbjct 1962 CTGACCCCGCAGGAGCAGACGCTGACGATGCGGGTCTTCACCGGTCTGACGCTCCTGGAC 1903 Query 59446 ACGATCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCGCACGAG 59505 || ||||||||||||||||| || || |||||||| || |||||||| ||||||||| Sbjct 1902 ACCATCCAGGGCACCGTGGGGGCGGTCTCGCTGATCCCCGATGCGATCACCCCGCACGAG 1843 Query 59506 GAGGCGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAGCAAC 59565 |||||||||||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct 1842 GAGGCGGTGTACACCAACATCGCCTTCATGGAGTCGGTGCACGCCAAGAGCTACTCGTCG 1783 Query 59566 ATCTTCTCGACGCTGTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTCGGAGGAG 59625 ||||||||||||||||||||| | |||||||| | || |||||||||||| |||| Sbjct 1782 ATCTTCTCGACGCTGTGCTCGACGCCCGAGATCGATGACGCCTTCCGCTGGTCGACGGAG 1723 Query 59626 AATCCGAACCTGCAACGCAAGGCTCAGATCGTCCTGGACTACTACCAGGGTGACGATCCG 59685 || |||||| || ||||| | ||||||| |||||||||||| || ||||| || Sbjct 1722 AACGAGAACCTTCAGAAGAAGGCGCGGATCGTCATGGACTACTACCGCGGCGACGAGCCC 1663 Query 59686 CTGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGCTTCTAC 59745 || ||||| |||||||| ||||| |||| ||| ||||||||||||||||||||||||| Sbjct 1662 CTCAAGCGCAAGGTGGCATCGACCCTGCTCGAGTCGTTCCTGTTCTACTCGGGCTTCTAC 1603 Query 59746 CTGCCGATGTACTGGTCTAGTCG--GGGGAAGCTGACGAACACGGCCGACATGATCCGGC 59803 |||||| |||||||||| |||| || |||||||||||||||||||||||| ||||| | Sbjct 1602 CTGCCGCTGTACTGGTC--GTCGAAGGCGAAGCTGACGAACACGGCCGACATCATCCGCC 1545 Query 59804 TCATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGCGGCC 59863 ||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||| | Sbjct 1544 TCATCATCCGCGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGCGCGGTC 1485 Query 59864 TGGAGACTCAGAACGAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGTCTGCTAC 59923 ||||| | | ||||||| ||| |||| | ||||||||| ||| | || || Sbjct 1484 TGGAGCTGCTGGACGAGGCGGCGCGCCAGGACATCAAGGACTACGCGTTCTCGCTCCTGT 1425 Query 59924 TCGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGACGGCGTGGGACTGA 59983 |||| |||||||||||||||| ||||||| |||||||| ||||||| || || || | Sbjct 1424 ACGAGCTGTACGACAACGAGATCCAGTACACCCAGGATCTCTACGACGAGGTCGGTCTCA 1365 Query 59984 CTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATCTCGGCT 60043 | ||||| || |||| |||||| | ||||||||||||||||||||||||||| ||||||| Sbjct 1364 CCGAGGACGTGAAGAAGTTCCTTCACTACAACGCCAACAAGGCGCTGATGAACCTCGGCT 1305 Query 60044 ACGAGGCGCTGTTCCCGCGCGAC-GAAACCGAGGTGAATGCGGCGATCTTGGCGGCACTG 60102 |||||||| |||||||| ||||| | ||||| ||||| |||||||| || |||| || Sbjct 1304 ACGAGGCGATGTTCCCG-GCGACCGTCACCGACGTGAACCCGGCGATCCTGTCGGCGCTC 1246 Query 60103 TCCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATGTGATT 60162 || || || ||||||||||||||||||||| || || ||| |||| || || Sbjct 1245 TCGCCGAACGCCGACGAGAACCACGACTTCTTCAGCGGGTCGGGCTCGTCGTACGTCATC 1186 Query 60163 GGCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCT 60202 |||||||| | | || || ||||| || |||||||||| Sbjct 1185 GGCAAGGCCGTCGCGACCGAGGACGACGACTGGGACTTCT 1146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258912395040684