Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq1626 1146 0.0 seq4945 168 2e-37 >seq1626 Length=4816 Score = 1146 bits (1270), Expect = 0.0 Identities = 1942/2777 (70%), Gaps = 101/2777 (4%) Strand=Plus/Minus Query 39308 GCGGGTTGCTCCGGTGGAGTCGAACGCACCGGCCTTGATCAAGGACTCGATGGCTCGCTT 39367 ||| || || ||| ||||||||||| || |||||||||| ||||||| || || || Sbjct 3878 GCGTGTCGCCCCGAGCGAGTCGAACGCGCCCGCCTTGATCAGCGACTCGACGGTCCGTTT 3819 Query 39368 GCTC---ACGGTCGCCTGAGTCGCTGCCTTC---AGGAAGTCCGGCAGGGAGGTGAACTT 39421 | | |||| | | || ||||| |||||||| | | ||| ||||| Sbjct 3818 GTTGGCGACGGGCACGGGAA------CCTTCGACAGGAAGTCGTGGAAGGACGTGAAGCG 3765 Query 39422 CCCC--CAGGCTTCCCGGAGTTCGGCGATCTCCGCGACCATGCCCTCGCCCACGTTCTTC 39479 | || | ||| ||| || |||| | |||||| | | || ||||| | Sbjct 3764 CGCCTCCTGGCGGGCCG-----CGACGATGGCGTCGACCACGTTAGCCCCGACGTTGCGC 3710 Query 39480 ACGGCGGTCAGCCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCTGTTCGAG 39539 || ||| ||| ||||||||||| || | | ||| || | ||| ||| | |||| Sbjct 3709 ACCGCGCCCAGTCCGAAGCGGATGTCTT---CGCCGACGGCCGCGAAGTAGCGGATCGAC 3653 Query 39540 ACCGACACGTCGGGCGGCAGGACCCGCAGGCCCATGCGCCGAGACTCGCCGAGGTACGTG 39599 || |||||| |||||||| ||| | ||||||||| || ||||| |||||| | Sbjct 3652 TCCCCCACGTCCGGCGGCAGCACCTTGATGCCCATGCGTCGGCACTCGTTGAGGTAGACG 3593 Query 39600 GCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGG 39659 |||||||||| |||| ||||||||| || || ||||||||||||||||| || Sbjct 3592 GCCATCTTGTCCTTGGAGTCGCCCACGCTCGTCAGGAGCGCCGCCATGTACTCGGCCGGA 3533 Query 39660 TAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCC 39719 || || | |||||| ||||||| | ||| | | ||||||||||| ||||||||||| Sbjct 3532 TAATGGGCCTTCAGGTACGCCGTCCAGTAGGACACCAGTCCGTACGCAGCCGAGTGCGCT 3473 Query 39720 TTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTGGATGGCACCG 39779 |||||||| |||||| | | ||| || | ||| | |||||||| |||| ||| || Sbjct 3472 TTGTTGAACGCGTAGTCCGAGAAGGGCAGCAGGATGTCCCACAGCGCCTTGATCGCCGAC 3413 Query 39780 TCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTG-GAAGTTCACGAACTCCTTGGCCAGAAC 39838 || |||||| ||||| | |||| | | |||| | || ||| |||| | || Sbjct 3412 TCGCCGTAGCCCCGCTCCTTCA-TCCCACCCGAGAAGCCCTCGTACTGCTTGTCGAG--- 3357 Query 39839 CTCGGGCTTCTTCTTG---CCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTA 39895 ||||| ||||||||| |||||||| ||||| || | ||| ||||| ||||| | | | Sbjct 3356 CTCGGACTTCTTCTTCTTCCCCATCGCACGGCGGAGAATGTCCGCCTGGCCGAGCGAGAA 3297 Query 39896 CCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGAGCTGGAAGGT 39955 || |||| ||| || | | | || |||||||| |||||||| || | || | Sbjct 3296 GCCCGCCACCTTCTGCGCGATCGCCATGACCTGCTCCTGATAGATGATCAGGCCGTAGCT 3237 Query 39956 CGGGTCCAGGATCTCCGACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTG 40015 ||| ||||| || || | ||| | | |||||||||||||||||||| | |||| Sbjct 3236 GATGTCGAGGATGTCTTTGAGCGGCTCCTCGAGCTCGGGGTGGATCGGCGTGACCTCCTG 3177 Query 40016 CTGCCCGTTCTTCCGGAGGGCGTAGTTCGTGTGAGACCCCACGCCCATCGGACCAGGACG 40075 ||| |||||||| |||||||||||||| |||| || | | ||||| || || || || Sbjct 3176 CTGACCGTTCTTGCGGAGGGCGTAGTTGATGTGGGAGTTCGCCCCCATGGGGCCGGGTCG 3117 Query 40076 GTACAGCGCGACGACGGCCGAGATGTCCTCGAAGTTGTCCGGCTTCAGCAGACGGAGCAG 40135 ||| ||||||| ||||||||| | ||||||||||||||| ||||| || || || ||||| Sbjct 3116 GTAGAGCGCGATGACGGCCGACACGTCCTCGAAGTTGTCGGGCTTGAGAAGTCGCAGCAG 3057 Query 40136 TGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAG 40195 |||||||||| || |||||||||||||| || ||| |||||||| | || ||||| Sbjct 3056 CGAGCGCATCGGACCACCGTCGAGCTGGAACACGCCGAGGGTGTCGCCACGGGTGAGCAG 2997 Query 40196 CTCGTACGTCGCGGGGTCGTCCAGGGGGATGTTCTCCAGGTCGACGTGCTCCCCACGGTT 40255 |||||||| ||| | |||||| || | || || ||| ||||||| | ||| || ||||| Sbjct 2996 CTCGTACGCCGCTGTGTCGTCGAGCGCGAGGTGCTCGAGGTCGAGCTCCTCGCCCCGGTT 2937 Query 40256 GAGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTC 40315 | |||||||| |||| |||||| |||||||||||||| || |||||||||||||| Sbjct 2936 CATCCGGATGTTGTCGAGCGCGTCCGAGATGATCGTGAGGTTGCGCAGCCCGAGGAAGTC 2877 Query 40316 CATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGTCGAACTGCGTGATCGTCGCGCC 40375 |||||| | ||| ||||| || ||||| ||| |||||||||||||||| || || Sbjct 2876 CATCTTGATCAGACCCAGGGCTTCGCACGACGGATAGTCGAACTGCGTGACGATCTGTCC 2817 Query 40376 GTCCTGCGGCCGAACCCACACCGGGATGTGGTCGACCAGCGGCTCGTCGGACATGATCAC 40435 ||||||| || | | ||||||| ||||| ||| ||||| |||||||| || Sbjct 2816 GTCCTGCTCGCGGCGCATGATCGGGATGATGTCGAGCAGGGGCTCCGACGACATGATGAC 2757 Query 40436 ACCGGCTGCGTGCACACCCATCTGCCGGACGAGACCTTCGAGACCGAGCGCGGTGTCGAT 40495 || || ||||| || ||| ||| || || || ||||| ||||| || ||||| Sbjct 2756 GCCCGCGGCGTGAACGCCCCACTGACGCTTCAGCCCCTCGAGCCCGAGAGCCCGGTCGAA 2697 Query 40496 GACCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCCGGATCTCGGCGGCCTCCTCGTA 40555 |||| |||||| || || |||| | || || | | |||| |||| |||||| | | | Sbjct 2696 GACCGTCTTGGCCTCGGGATCGGTGTCGATGAGGGCGCGGAACTCGCTGGCCTCTTTGAA 2637 Query 40556 CCGAGGGTGCTCGGCGTTGAAGATCCCGTCGAGGGGCATCGAGTTGCCCATCACGTCGGC 40615 || || |||| ||||| | | |||||| || ||||| |||||||| || | | Sbjct 2636 GCGCGGATGCTGGGCGTCGTACATCCCGCTCAGCGGCATGTCCTTGCCCATGACCGCCGG 2577 Query 40616 CGGGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCTGC 40675 ||| |||||||||||| ||| || | ||| || | ||||||| ||| |||| Sbjct 2576 CGGCATGGCCTTGGTCAGCCGCTCCCCCATGCTGAACGGGAAGCCCAGCACCCGGCCTGC 2517 Query 40676 GTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTC 40735 |||||||| || | | |||||| ||||||||| |||||||||||||| || Sbjct 2516 GTCCTTCAGAGCCTGCTTGGACTTGATGGTGCCGTACGTCACGATCTGCGCGACCCGCTC 2457 Query 40736 GGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATCGAAGTC 40795 || ||||||||| ||||||||| | |||||||||||| || |||||||| |||||||| Sbjct 2456 GGAGCCGTACTTCTCGGTGACGTAGTCGATCACCTCGCCGCGGCGCCGGTCGTCGAAGTC 2397 Query 40796 GATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCC 40855 || |||| |||||||| || ||||| |||||||||||||| || |||||||| || || Sbjct 2396 GACATCGAAGTCGGGCATCGAGACGCGGTCGGGGTTCAGGAAGCGTTCGAAGATCAGGCC 2337 Query 40856 GTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGC 40915 |||||| |||||||||||||||||||| | | | |||||||||||| ||| || || | Sbjct 2336 GTGCTCGAGCGGGTCGAGGTCGGTGATGCGCATGGCGTAGGCGACCATCGACCCCGCGCC 2277 Query 40916 AGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGC 40975 || || || || || || || | || |||||| ||||| |||||| ||||||||| || Sbjct 2276 GGAACCGCGGCCGGGACCCACGCGGATGCCGTTGTCCTTGGCCCAGTTGATGAAGTCGGC 2217 Query 40976 GACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAG 41035 |||||| |||||||| ||||| |||||||| | ||| || || ||||||||| | Sbjct 2216 GACGACCAGGAAGTAGCCGGGGAACCCCATCTGCAGGATGATTCCGGTCTCGTACTCGGC 2157 Query 41036 CTGCTTGCCGTGCTCGTAGTCCG---TGCCGTTCGGGTACCGACGACGCGCGCCTCGGGC 41092 |||||||| | ||| ||||| |||||||||||||||| | | ||| | Sbjct 2156 CTGCTTGC---GGACGTTGTCCGGGATGCCGTTCGGGTACCGGTAATGGAGGCCCTTCTC 2100 Query 41093 GACCTCGTCCTCGAACCAGGTGATCTCCGTGTGCCCCTCGGGCACCGGGAACTTCGGCAT 41152 |||||| | | | |||| || ||| || | || |||||||| ||||| |||||| Sbjct 2099 GACCTCCTTGACCAGCCAGCTGTCCTCGGTCTCACCGTCGGGCACGGGGAAGCGCGGCAT 2040 Query 41153 CAGGTT----CTCGTGCTCGAACATGCCGGTGGTGTCGACCATCTCGGCGATGTCCAGCG 41208 ||| |||||| | |||| | | | | ||| |||||||||| |||| Sbjct 2039 GTAGTTGGCGCTCGTG-TTGAACTCGAC-CTCGCATCG-----CTCGGCGATGAGGAGCG 1987 Query 41209 TGGTCCGCATCCCCCACTCCCAGATGGGAGAGGAGTCGAT-GGCCGCCATCTCGGCGGCC 41267 || | || | | | || | || | ||| ||| |||| |||||| ||| Sbjct 1986 TGTT----GTCGCACGCCTCCGGGTGCTCGCGGA--AGATCTGCCG-CATCTCCTGCGCC 1934 Query 41268 GACTTCAGGTAGTACCCGGAGCCCTCGAAGCGGAAGCGGTGAGGGTTATCGAGCGTGGTG 41327 | ||| | |||||||||| ||| ||||| |||||||| |||| ||||| || | Sbjct 1933 GTCTTGACGTAGTACCCGTCGCCATCGAACTTGAAGCGGTTGGGGTCGTCGAGGGTCGAT 1874 Query 41328 CCGGTCTGGACGCACAGCAGTGCATCGTGAGCGACCGACTCCTCGGCGGT-GACGTAGTG 41386 || | ||| ||||||||||| || |||| ||| | | ||| | | ||| | |||||| Sbjct 1873 CCCGACTGCACGCACAGCAGCGCCGCGTGCGCGTCGGCCTCGT-GCTGGTGGGTGTAGTG 1815 Query 41387 GGAATCGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGATCCTC 41446 ||| ||||| || ||||| | | || |||| | |||| || ||| |||||| Sbjct 1814 GGAGTCGTTGGTCGCCACCAGCGGGATGCCGAGATCCTTCGAGATGCGGATCAGATCGGT 1755 Query 41447 GCGGACCCGGCGCTCGATCTCGATGCCGTGGTCCATCAGCTCCAGGAAGTACCGGTCACG 41506 ||||| |||||||| || ||||| ||||| | ||| |||||| || | Sbjct 1754 CATCACCCGCCGCTCGATGGAGAGCCCGTGATCCATGATCTCGGCGAAGTAGTTCTCCCT 1695 Query 41507 CCCGAAGACCTCCAGGTACCGACCGGCCTCCTTCACGGCCTCGTCGTACTGCCCGAGGTT 41566 ||||||| ||| || || ||||| || | || |||||||||| ||||| Sbjct 1694 GCCGAAGATGTCCTGGAACTCCGCGGCCGCCGCCCGCGCGGCGTCGTACTGGCCGAGACG 1635 Query 41567 CAGCCGGGTCATGA--TCGCACCGCCAGGACATCCGGTCGTGACGACCAGGCCCTCGTTG 41624 ||| || ||| | |||| ||| | || || || ||||| ||| ||| |||| | | Sbjct 1634 CAGTCGCGTCTGCACCTCGC-CCGAC-GGGCACCCCGTCGTCGCGATCAGTCCCTTGCCG 1577 Query 41625 T-GCTCGGCGACCAGGTCGAAGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCCTGGT 41682 | | || ||| ||| || |||||| ||||| ||| | || | |||||| | Sbjct 1576 TAGGTC-TCGAGCAGTTCCCGGTCCATACGCGG---CTTGAAGTAGTA-CCCCTCCATGC 1522 Query 41683 ACGACCGCGAGCTGAGCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCGTGGA--GAGGAT 41740 |||| |||||||||| | ||| ||||||| ||| || || | | || || Sbjct 1521 TCGACAACGAGCTGAGCCGGAAGAGATTGTGCATGCC-CTC-GGTGCTTTGACTCCACAT 1464 Query 41741 CGTGAGGTGCGTGTACGCACCCCGACCGCTCACGTCGTACCGCT--TCTGGTCTTCCGTG 41798 ||| | ||| |||||||| || ||| || |||| |||| ||| || ||| Sbjct 1463 CGTCATGTGGGTGTACGCGCCGGAGCCGGAGACATCGT--CGCTGCGCTGCTCGGGGGTG 1406 Query 41799 CCCCACTGGACTCGCTCCTGGTCGAAGCGG---GAGTCCGGGGCCATGTACGCCTCGATG 41855 |||||||| || || | |||| |||| | | | |||| | ||| ||||||| Sbjct 1405 CCCCACTGCACGCGGGATTTGTCGCTGCGGTGCGTGCCGGGGGTGACGTAGGCCTCGAGA 1346 Query 41856 CCGATGATCGGCTTGACCCCAGCGGCCTGCGCCGAGGTGAAGAAGTCGTACGCACCGTGA 41915 |||||||||||||||| || || |||| || | | || |||| ||| ||| ||| || Sbjct 1345 CCGATGATCGGCTTGATGCCCGCCGCCTTGGCGGCGTTGTAGAACTCGAACG--CCGCGA 1288 Query 41916 AG--GTTGCCGTGGTCCGTCACTGCGACGGCAGGAGCACCCTGGCGGGCGACCTCGGCGA 41973 || |||||||||||| || || |||| ||| | ||| | || ||||| Sbjct 1287 AGGTGTTGCCGTGGTCGGTGACGGCGATGGCCG--GCA-------TGCCGTAATCGGCCG 1237 Query 41974 CCATCTGCTTCAT----CCGA-----GCGGCCCCGTCGAGGAGGCTGTACTCGGAGTGGT 42024 || |||| |||| |||| || ||||||||||| | ||||||| ||| Sbjct 1236 CCGCCTGCGTCATGGCGCCGATCTTGGCCGCCCCGTCGAGCATCGAGTACTCGCTGTGCA 1177 Query 42025 TGTGCAGGTGGACGAAG 42041 ||||||||| |||||| Sbjct 1176 CGTGCAGGTGAACGAAG 1160 >seq4945 Length=1226 Score = 168 bits (186), Expect = 2e-37 Identities = 372/549 (68%), Gaps = 23/549 (4%) Strand=Plus/Minus Query 37136 GTGAGGGGCATCGCGTCGGCGAAGACCTCCTCCATCTCGTCGGCCACCATCTCGATCTCC 37195 ||||||||||| ||||| ||| ||||||||| ||||| |||||||||||| Sbjct 1161 GTGAGGGGCATGAGCTCGGCCCAGAAGGCCTCCATCTTCTCGGCGCACATCTCGATCTCG 1102 Query 37196 TTCTGCGGGAAGGAGGGGTAC--GC-CGACTCGTCGTTGATCGTGCGCAGCGAGAGGAAG 37252 |||||||||||||||| | || | |||| | ||| |||||||| || |||||| Sbjct 1101 CGCTGCGGGAAGGAGGGGAAGTGGCTCCCCTCGGCCTTG---GTGCGCAGAGACAGGAAG 1045 Query 37253 TGCATCAAGCTGCGAGGGTTGCACGTGGCGTAGTACGAGGTCATGAGGCCCACCGGCAGG 37312 | ||||| || | || ||| |||| ||||| || | || |||||| Sbjct 1044 TTCATCAGCGACCGCGCATTCATGGTGACGTACATCGAGGAGTAGATGTTCAGCGGCAGC 985 Query 37313 ATCATCCGGGCCACCTCCTTGGCGATGCCGTGCAGGAGCATCGCCTCGTA---CTCGC-- 37367 | || ||||||||||| |||| ||| | |||||| || ||| |||| Sbjct 984 ACGATACGGGCCACCTCTCGCGCGACGCCCGCCGCCAGCATCCGCTGGTAGGTCTCGAAT 925 Query 37368 -CGTAGATCGCCTCGTACGTTCCCTGCATGACGTAGGGGACGAGGCCCTTCTGGAAGCTG 37426 ||| | | || || ||| ||| | | | ||||| | | ||| | Sbjct 924 GCGTCGGTGGCGACG--CGTC----GCACCCCCTCGTCGACGACCGCGTGCTGCTCGGGC 871 Query 37427 GTGCCAGGCTCGAAGGTGTACGCACCAGGCTTGCCCACCTGGACAAGGTTGCGCTCCTT- 37485 ||||| || ||| ||| || || ||||| || ||||| || |||||||| ||| Sbjct 870 GTGCCGGGGAGGAACTCGTAGGCTCCGGGCTTTCCGACCTGCACCAGGTTGCGGTCCGCC 811 Query 37486 GCCGGGCACGTAGAACGAGGGCTTCAGGGTCTTGTAGCGGCCCGACTCCTCGTTGTACGA 37545 |||||| |||||||| ||| ||| | ||| | ||| ||||||||||||||||| Sbjct 810 GCCGGG-ACGTAGAAGACCGGCCGCAGCTCCCGGTACCTGCCGGACTCCTCGTTGTACGA 752 Query 37546 CCACCCGGCGCGGTGGCGGAAGTGCTCGCGGGCCACGAAGATCGGGGCCTCGACGTAGAA 37605 || |||||| || | | |||||| ||||||||||| |||| |||||||| Sbjct 751 GG---CGATGCGGTGCCGCATGAATTCGCGGAAGACGAAGATCGGCGCCTGAACGTAGAA 695 Query 37606 GGTGAAGCTGCCGTGCTCGAAGGGCGAGCCGTGCCTGTCCCGCATGAGGTAGTTGATCAG 37665 || | | ||||||||||||||| ||||| | || |||||||||||||||||||| Sbjct 694 CGTCATCGAGTTGTGCTCGAAGGGCGACCCGTGTCGATCGCGCATGAGGTAGTTGATCAG 635 Query 37666 GCCCTCGTC 37674 ||||| ||| Sbjct 634 GCCCTTGTC 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164833135066812