Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_021306.1 Length=75736 Score E Sequences producing significant alignments: (Bits) Value seq4983 432 2e-116 seq780 143 1e-29 >seq4983 Length=1217 Score = 432 bits (478), Expect = 2e-116 Identities = 583/807 (72%), Gaps = 15/807 (2%) Strand=Plus/Minus Query 65060 GTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTAC 65119 || || ||||| |||||||||| ||||| |||||| ||| || ||| |||| ||| Sbjct 863 GTCGAGGTCATCTCCACCGGCTCCATCGCGTTGGACGTCGCCCTCGGCGTCGGCGGGCTT 804 Query 65120 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 65179 || | |||||| | | || |||||||| || ||||| || || ||| | || || | Sbjct 803 CCCCGCGGCCGGATCATCGAGATCTACGGTCCGGAATCCTCCGGTAAGACCACGCTCACT 744 Query 65180 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 65239 || || ||| | || || | |||| |||| |||| |||||| | ||||||||| ||| Sbjct 743 CTGCATGCGATCGCGAACGTGCAGCGCTCCGGCGGCATCGCCGCGTTCATCGACGCCGAG 684 Query 65240 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 65299 ||| | || ||||| || ||||||||| |||||| || ||| ||||| || ||||| Sbjct 683 CACGCGCTCGACCCCGATTACGCCAAGAAGCTCGGAGTCGACATCGACTCGCTGCTGGTG 624 Query 65300 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 65359 ||||| ||||| || |||||||| || ||||||| ||| | |||||| || || Sbjct 623 TCGCAGCCCGACACGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTCGTCCGCTCGGGA 564 Query 65360 GAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 65419 | | | | |||| ||| | ||||| || ||||| || |||||| |||||| |||| Sbjct 563 GCGATCGACCTCGTGGTCATCGACTCCGTCGCGGCGCTCGTGCCGAAGGCCGAGATCGAG 504 Query 65420 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 65479 || || || || || |||||||| || || || || |||||||||||||| | ||| Sbjct 503 GGTGAGATGGGCGATTCCCACGTCGGTCTCCAAGCACGGCTCATGTCGCAGGCGCTTCGC 444 Query 65480 AAGCTCACC----GGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTT 65535 ||||| ||| ||| | || ||| || ||||| || | ||| |||||||| | Sbjct 443 AAGCTGACCGGTGGGCTCAAT---CAG-ACGAACACCACGATGATCTTCATCAACCAGCT 388 Query 65536 GCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGC 65595 ||||||||||||||| |||| || ||| | |||||||||| | || || ||||| Sbjct 387 GCGCGAGAAGATCGG---CGTGTTCTTCGGGTCTCCCGAGACCACCGCCGGTGGAAAGGC 331 Query 65596 TTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGG 65655 ||| ||||||||| || || ||| |||| ||||||| |||| || ||||| || Sbjct 330 GCTGAAGTTCTACGCGTCGGTGCGCCTGGACATCCGTCGTATCGAGACGCTCAAGGACGG 271 Query 65656 CGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 65715 |||||||| ||||||||||| ||||| || ||||||||||||||| |||| ||||| Sbjct 270 TACCGAGGCTGTGGGCAACCGCACGCGGGTCAAAGTCGTCAAGAACAAGATGGCGCCGCC 211 Query 65716 GCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAA-- 65773 | | | ||||||||| | || | ||||| | || |||||||| |||| ||| Sbjct 210 GTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGTATCTCGCGAGAGG--GAAGC 153 Query 65774 CTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTAC 65833 ||| |||| | | ||| ||| || | |||||||||||||||||||||| || |||| Sbjct 152 CTCATCGATTTCGGCGTCGAGCACGGGATCGTGAAGAAGTCGGGCGCCTGGTACACGTAC 93 Query 65834 GGGGACAAGAACGTCGCTCAGGGCAAG 65860 | | || | ||| ||||||||| Sbjct 92 GACGGGGAGCAGCTCGGCCAGGGCAAG 66 >seq780 Length=13225 Score = 143 bits (158), Expect = 1e-29 Identities = 331/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 65222 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 65281 |||| |||||| ||||||||| | | || | | ||||||||||| || ||||| ||| Sbjct 7507 GCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 7566 Query 65282 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 65341 | ||| || || ||||||||| | || || | || ||||| |||| ||| Sbjct 7567 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGAC 7626 Query 65342 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 65401 ||| || ||||| | | || | |||| || | ||| ||||||||| || ||| Sbjct 7627 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 7686 Query 65402 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 65461 ||||| |||||||| || ||||| || || ||| || | | ||||| ||||| | Sbjct 7687 CCGCGTGCCGAGCTTGAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCAAGCGCGATTA 7746 Query 65462 ATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACG 65518 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 7747 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 7804 Query 65519 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACC 65578 ||| | |||||| | ||| ||||| | |||| | || ||| | ||| | Sbjct 7805 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 7860 Query 65579 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 65638 || |||| |||| || ||| | | ||||| || || ||| |||| | || |||| Sbjct 7861 ACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAAG 7920 Query 65639 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 65698 | | ||||||||||| || |||||||||| || |||||||| | |||| Sbjct 7921 ACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 7980 Query 65699 AACAAGCTGGCCCCGCC 65715 ||||||||||| |||| Sbjct 7981 AACAAGCTGGCGTCGCC 7997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242212807941503