Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq1626 1117 0.0 seq4945 241 4e-59 >seq1626 Length=4816 Score = 1117 bits (1238), Expect = 0.0 Identities = 1935/2767 (70%), Gaps = 95/2767 (3%) Strand=Plus/Minus Query 38768 GCGGGTTGCCCCGGTCGAGTCGAAGGCACCGGCCTTGATCAGGGACTCGATGGCTCGCTT 38827 ||| || |||||| ||||||||| || || ||||||||||| ||||||| || || || Sbjct 3878 GCGTGTCGCCCCGAGCGAGTCGAACGCGCCCGCCTTGATCAGCGACTCGACGGTCCGTTT 3819 Query 38828 GCTCACCGTCGCCTGAGTCGCTG-CCTTC---AGGAAGTCCGGCAGGGAGGTGAACTTCC 38883 | | | || | | || ||||| |||||||| | | ||| ||||| | Sbjct 3818 GTT----GGCGACGGGCACGGGAACCTTCGACAGGAAGTCGTGGAAGGACGTGAAGCGCG 3763 Query 38884 CC--CAGGCTTCCCGGAGTTCAGCGATCTCCGCGACCATGCCCTCGCCCACGTTCTTCAC 38941 || | ||| ||| | |||| | |||||| | | || ||||| ||| Sbjct 3762 CCTCCTGGCGGGCCG-----CGACGATGGCGTCGACCACGTTAGCCCCGACGTTGCGCAC 3708 Query 38942 GGCGGTCAGTCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGTGAACGAGCTGTTCGAGAC 39001 ||| ||||||||||||||| || | | ||| || | ||| ||| | |||| | Sbjct 3707 CGCGCCCAGTCCGAAGCGGATGTCTT---CGCCGACGGCCGCGAAGTAGCGGATCGACTC 3651 Query 39002 CGACACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCGTGCCTCGCCGAGGTACGTGGC 39061 | |||||| |||||||| ||| | ||||||||| || |||| |||||| ||| Sbjct 3650 CCCCACGTCCGGCGGCAGCACCTTGATGCCCATGCGTCGGCACTCGTTGAGGTAGACGGC 3591 Query 39062 CATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCCGGGTA 39121 |||||||| |||| ||||||||| || || |||||||||||||||||||| || Sbjct 3590 CATCTTGTCCTTGGAGTCGCCCACGCTCGTCAGGAGCGCCGCCATGTACTCGGCCGGATA 3531 Query 39122 GTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTT 39181 || | ||||| ||||||| | ||| | | ||||||||||| ||||||||||| || Sbjct 3530 ATGGGCCTTCAGGTACGCCGTCCAGTAGGACACCAGTCCGTACGCAGCCGAGTGCGCTTT 3471 Query 39182 GTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTC 39241 |||||| |||||| | | |||||| | ||| | |||||||| |||| ||| || || Sbjct 3470 GTTGAACGCGTAGTCCGAGAAGGGCAGCAGGATGTCCCACAGCGCCTTGATCGCCGACTC 3411 Query 39242 CGAGTAGCCTCGCTCGCGCGCTCCCTTCTG-GAAGTTCACGAACTCCTTGGCCAGAACCT 39300 |||||| ||||| | |||| | | |||| | || ||| |||| | || || Sbjct 3410 GCCGTAGCCCCGCTCCTTCA-TCCCACCCGAGAAGCCCTCGTACTGCTTGTCGAG---CT 3355 Query 39301 CGGGCTTCTTCTTG---CCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACC 39357 ||| ||||||||| |||||||| ||||| || | ||| ||||| || || | | | | Sbjct 3354 CGGACTTCTTCTTCTTCCCCATCGCACGGCGGAGAATGTCCGCCTGGCCGAGCGAGAAGC 3295 Query 39358 CGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGATCAACTGGAATGTCG 39417 | |||| ||| || | | | ||||||||||| |||||||||| | | | Sbjct 3294 CCGCCACCTTCTGCGCGATCGCCATGACCTGCTCCTGATAGATGATCAGGCCGTAGCTGA 3235 Query 39418 GGTCCAGGATCTCCGACAGGGACTCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCT 39477 ||| ||||| || || | ||| | | |||||||||||||||||||| | |||||| Sbjct 3234 TGTCGAGGATGTCTTTGAGCGGCTCCTCGAGCTCGGGGTGGATCGGCGTGACCTCCTGCT 3175 Query 39478 GCCCGTTCTTCCGGAGGGCGTAGTTCGTGTGAGACCCCACGCCCATCGGACCCGGACGGT 39537 | |||||||| |||||||||||||| |||| || | | ||||| || || || |||| Sbjct 3174 GACCGTTCTTGCGGAGGGCGTAGTTGATGTGGGAGTTCGCCCCCATGGGGCCGGGTCGGT 3115 Query 39538 ACAGCGCGACGACGGCTGAGATGTCCTCGAAGTTGTCCGGCTTCAGCAGGCGGAGCAGTG 39597 | ||||||| |||||| || | ||||||||||||||| ||||| || || || ||||| | Sbjct 3114 AGAGCGCGATGACGGCCGACACGTCCTCGAAGTTGTCGGGCTTGAGAAGTCGCAGCAGCG 3055 Query 39598 AGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCT 39657 ||||||||| || |||||||||||||| || ||| |||||||| | || ||||||| Sbjct 3054 AGCGCATCGGACCACCGTCGAGCTGGAACACGCCGAGGGTGTCGCCACGGGTGAGCAGCT 2995 Query 39658 CGTAGGTCGGGGCGTCGTCCAGAGGGATGTTCTCCAGGTCGACGTGCTCCCCACGGTTGA 39717 |||| | || | |||||| || | || || ||| ||||||| | ||| || ||||| | Sbjct 2994 CGTACGCCGCTGTGTCGTCGAGCGCGAGGTGCTCGAGGTCGAGCTCCTCGCCCCGGTTCA 2935 Query 39718 GGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCA 39777 |||||||| |||| |||||| |||||||||||||| || |||||||||||||||| Sbjct 2934 TCCGGATGTTGTCGAGCGCGTCCGAGATGATCGTGAGGTTGCGCAGCCCGAGGAAGTCCA 2875 Query 39778 TCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGTCGAACTGCGTGATCGTCGCGCCGT 39837 |||| | ||| ||||| || ||||| ||| |||||||||||||||| || |||| Sbjct 2874 TCTTGATCAGACCCAGGGCTTCGCACGACGGATAGTCGAACTGCGTGACGATCTGTCCGT 2815 Query 39838 CCTGCGGCCGAACCCACACCGGGATGTGGTCGACCAGAGGCTCGTCGGACATGATCACAC 39897 ||||| || | | ||||||| ||||| ||| ||||| |||||||| || | Sbjct 2814 CCTGCTCGCGGCGCATGATCGGGATGATGTCGAGCAGGGGCTCCGACGACATGATGACGC 2755 Query 39898 CGGCTGCGTGCACACCCATCTGCCGGACGAGACCTTCGAGACCGAGCGCGGTGTCGATGA 39957 | || ||||| || ||| ||| || || || ||||| ||||| || ||||| || Sbjct 2754 CCGCGGCGTGAACGCCCCACTGACGCTTCAGCCCCTCGAGCCCGAGAGCCCGGTCGAAGA 2695 Query 39958 CCTCCTTGGCGTCCGGGTCGGAGCCGTAGATGCCCCGGATCTCGGCGGCCTCCTCGTACC 40017 || |||||| || || |||| | || || | | |||| |||| |||||| | | | | Sbjct 2694 CCGTCTTGGCCTCGGGATCGGTGTCGATGAGGGCGCGGAACTCGCTGGCCTCTTTGAAGC 2635 Query 40018 GAGGGTGCTCGGCGTTGAAGATGCCTTCGAGGGGCATCGAGTTGCCCATCACGTCGGCCG 40077 | || |||| ||||| | | || || || ||||| |||||||| || | | || Sbjct 2634 GCGGATGCTGGGCGTCGTACATCCCGCTCAGCGGCATGTCCTTGCCCATGACCGCCGGCG 2575 Query 40078 GGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCGAGCACGCGAGCCGCGT 40137 | |||||||||||| ||| || | ||| || | | ||||| || | |||| Sbjct 2574 GCATGGCCTTGGTCAGCCGCTCCCCCATGCTGAACGGGAAGCCCAGCACCCGGCCTGCGT 2515 Query 40138 CCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGG 40197 |||||| || | | |||||| ||||||||| |||||||||||||| |||| Sbjct 2514 CCTTCAGAGCCTGCTTGGACTTGATGGTGCCGTACGTCACGATCTGCGCGACCCGCTCGG 2455 Query 40198 CCCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACGACGCCGGTCATCGAAGTCGA 40257 ||||||||| ||||||||| | ||| |||||||| || |||||||| |||||||||| Sbjct 2454 AGCCGTACTTCTCGGTGACGTAGTCGATCACCTCGCCGCGGCGCCGGTCGTCGAAGTCGA 2395 Query 40258 TGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGT 40317 |||| |||||||| || ||||| ||||||||||||||||| |||||||| || |||| Sbjct 2394 CATCGAAGTCGGGCATCGAGACGCGGTCGGGGTTCAGGAAGCGTTCGAAGATCAGGCCGT 2335 Query 40318 GCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAG 40377 |||| |||||||||||||||||||| | | | |||||||||||| ||| || || | | Sbjct 2334 GCTCGAGCGGGTCGAGGTCGGTGATGCGCATGGCGTAGGCGACCATCGACCCCGCGCCGG 2275 Query 40378 AGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGA 40437 | || || || || || || | || ||||| ||||| |||||| ||||||||| |||| Sbjct 2274 AACCGCGGCCGGGACCCACGCGGATGCCGTTGTCCTTGGCCCAGTTGATGAAGTCGGCGA 2215 Query 40438 CGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCT 40497 |||| |||||||| |||||||||||||| | ||| || || ||||||||| | || Sbjct 2214 CGACCAGGAAGTAGCCGGGGAACCCCATCTGCAGGATGATTCCGGTCTCGTACTCGGCCT 2155 Query 40498 GCTTGCCGTGCTCGTAGTCCG---TGCCGTTCGGGTACCGACGACG--GGCACCTCGATG 40552 |||||| | ||| ||||| |||||||||||||||| | | ||| | || | Sbjct 2154 GCTTGC---GGACGTTGTCCGGGATGCCGTTCGGGTACCGGTAATGGAGGCCCTTC--TC 2100 Query 40553 GACCTCGTCCTCGAACCAGGTGATCTCCGTGTGCCCCTCGGGCACCGGGAACTTCGGCAT 40612 |||||| | | | |||| || ||| || | || |||||||| ||||| |||||| Sbjct 2099 GACCTCCTTGACCAGCCAGCTGTCCTCGGTCTCACCGTCGGGCACGGGGAAGCGCGGCAT 2040 Query 40613 CAGGTT----CTCGTGCTCGAACATGCCCGTGGTGTCGACCATCTCGGCGATCTCCAGCG 40668 ||| |||||| | |||| | || | | ||| ||||||||| |||| Sbjct 2039 GTAGTTGGCGCTCGTG-TTGAACTCGACC-TCGCATCG-----CTCGGCGATGAGGAGCG 1987 Query 40669 TGGTCTTCATGCCCCACTGCCAGATCGGCGAAGAGTCGATCGCCGCCATCTCTTCGGCGG 40728 | || || | || | | | ||| ||||| || |||| |||||| | || | Sbjct 1986 T-GTTGTCGCACGCCTCCGGGTGCTCGCGGAAGA-TC---TGCCG-CATCTCCTGCGCCG 1933 Query 40729 ACTTCAGGTAGTACCCGGAGCCCTCGAAGCGGAAGCGGTTCGGGTTGTCGAGCGTGGTGC 40788 ||| | |||||||||| ||| ||||| ||||||||| |||| |||||| || | | Sbjct 1932 TCTTGACGTAGTACCCGTCGCCATCGAACTTGAAGCGGTTGGGGTCGTCGAGGGTCGATC 1873 Query 40789 CGGTCTGGACGCACAGCAGTGCATCGTGAGCGACCGACTCCTCGGCGGT-GACGTAGTGG 40847 | | ||| ||||||||||| || |||| ||| | | ||| | | ||| | ||||||| Sbjct 1872 CCGACTGCACGCACAGCAGCGCCGCGTGCGCGTCGGCCTCGT-GCTGGTGGGTGTAGTGG 1814 Query 40848 GAATCGTTCGTGACCACCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGGTC-GTC 40906 || ||||| || ||||| | | || |||| | |||| || ||| ||| || ||| Sbjct 1813 GAGTCGTTGGTCGCCACCAGCGGGATGCCGAGATCCTTCGAGATGCGGATCAGATCGGTC 1754 Query 40907 ACGGACCCGGCGCTCGATCTCGATGTCGTGGTCCATGAGTTCGAGCAGGTACCGGTCACG 40966 | ||||| |||||||| || |||| ||||||| ||| | ||| || | Sbjct 1753 A-TCACCCGCCGCTCGATGGAGAGCCCGTGATCCATGATCTCGGCGAAGTAGTTCTCCCT 1695 Query 40967 CCCGAAGACCTCCAGGTAC----CGACCAGCCTCCTTCACGGCCTCGTCGTACTGCCCGA 41022 ||||||| ||| || || || || ||| || | ||| |||||||||| |||| Sbjct 1694 GCCGAAGATGTCCTGGAACTCCGCGGCC-GCCGCCCGCGCGG---CGTCGTACTGGCCGA 1639 Query 41023 GGTTGAGCCGGGTCATGA--TCGCACCGCCAGGGCAGCCAGTCGTGACGACCAGGCCCTC 41080 | || || ||| | |||| ||| | ||||| || ||||| ||| ||| |||| Sbjct 1638 GACGCAGTCGCGTCTGCACCTCGC-CCGAC-GGGCACCCCGTCGTCGCGATCAGTCCCTT 1581 Query 41081 GTTGT-GCTCGGCGACCAGCTCGAAGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCC 41138 | || | || ||| ||| || |||||| ||||| ||| | || | |||||| Sbjct 1580 GCCGTAGGTC-TCGAGCAGTTCCCGGTCCATACGCGG---CTTGAAGTAGTA-CCCCTCC 1526 Query 41139 TGGTACGACCGAGAGCTGAGCTTCATGAGGTTGTGGA-GCCCGGTCTTGTTCGTGGA--G 41195 | |||| ||||||||| | ||| ||||| | |||| || || | | || Sbjct 1525 ATGCTCGACAACGAGCTGAGCCGGAAGAGATTGTGCATGCCC--TC-GGTGCTTTGACTC 1469 Query 41196 AGGATCGTGAGGTGCGTGTACGCGCCGTTGCCCGACACGTCGTAACGCT--TCTGTTCGG 41253 ||||| | ||| |||||||||||| ||| || || |||| |||| ||| |||| Sbjct 1468 CACATCGTCATGTGGGTGTACGCGCCGGAGCCGGAGACATCGT--CGCTGCGCTGCTCGG 1411 Query 41254 GGGCTCCCCACTTGACGCG---CTCCTGGCTCTGCCTCTTGTCGGGTGCCATGTAGGCTT 41310 ||| ||||||| ||||| | | ||| | | || |||| | | |||||| | Sbjct 1410 GGGTGCCCCACTGCACGCGGGATTTGTCGCTGCGGTGCGTGCCGGGGGTGACGTAGGCCT 1351 Query 41311 CGATCCCGATCACGGGGATGATGCCAGCCTCGGTCGCGGCCTTGTAGAACTCGTAGGACC 41370 ||| ||||| | || ||||||| ||| | | ||||| |||||||||||| | | | Sbjct 1350 CGAGACCGATGATCGGCTTGATGCCCGCCGCCTTGGCGGCGTTGTAGAACTCGAACGCCG 1291 Query 41371 CGTGCATCTGGCCGTGGTCTGTGATGGCCAGAGCCCTCATCCCCTGGCGCTTCGCCTCGG 41430 || | | ||||||||| |||| ||| | ||| ||| || | | ||| | | Sbjct 1290 CGAAGGTGTTGCCGTGGTCGGTGACGGCGATGGCCGGCATGCC---GTAATCGGCCGCCG 1234 Query 41431 CCACCATCTTGG---CGATCTTGGCGTGCCCGTCGAGGAGTGAGAACTCCGAGTGAACAT 41487 || | || ||| |||||||||| ||||||||| | ||| |||| ||| || | Sbjct 1233 CCTGCGTCATGGCGCCGATCTTGGCCGCCCCGTCGAGCATCGAGTACTCGCTGTGCACGT 1174 Query 41488 GAAGGTG 41494 | ||||| Sbjct 1173 GCAGGTG 1167 Score = 82.4 bits (90), Expect = 2e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 38573 CTCCAGCCCGGCGAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCGCGCTCGATGGC 38632 ||||| ||| ||||||||||||||||||||||| || || |||||||||||||||| ||| Sbjct 4103 CTCCAACCCCGCGAGCGGGTGGTCGGAGACGTAGAGCCCGAGCATCTCGCGCTCGAAGGC 4044 >seq4945 Length=1226 Score = 241 bits (266), Expect = 4e-59 Identities = 379/538 (70%), Gaps = 11/538 (2%) Strand=Plus/Minus Query 36892 GGTGAGGGGCATGTCCTGATGGAAGAAGTCCTCCATCTTCTCGGCGGCCATCTCGATCTC 36951 ||||||||||||| || ||||| ||||||||||||||||| |||||||||||| Sbjct 1162 GGTGAGGGGCATGAGCTCGGCCCAGAAGGCCTCCATCTTCTCGGCGCACATCTCGATCTC 1103 Query 36952 CCGCTGGGGGAACGAGGGGAAGGTCGACTCCTCGTCGGTCGTGCGCAGCGAGAGGAAGTG 37011 ||||| ||||| ||||||||| | ||||| | | |||||||| || ||||||| Sbjct 1102 GCGCTGCGGGAAGGAGGGGAAGTGGCTCCCCTCGGCCTTGGTGCGCAGAGACAGGAAGTT 1043 Query 37012 CATGAGGCTGCGCGGGTTGCAGGTCGCGTAGAACGAGGTGTAGATGCCCACCGGCAGGAT 37071 ||| || |||| || ||| |||| | ||||| ||||||| || |||||| | Sbjct 1042 CATCAGCGACCGCGCATTCATGGTGACGTACATCGAGGAGTAGATGTTCAGCGGCAGCAC 983 Query 37072 GCTGCGGGCCACCTCCTTGGCGATGCCGTGCAGAAGCAGTGCCTCGTACTCGTCGTA--- 37128 | | ||||||||||| |||| ||| | |||| || ||| ||| | Sbjct 982 GATACGGGCCACCTCTCGCGCGACGCCCGCCGCCAGCATCCGCTGGTAGGTCTCGAATGC 923 Query 37129 GACCGTGGCGTACGTGT-GCTCGAAGACGTAGGGCACGAGGCCCTTCTGGAAGTTGGTGC 37187 | | |||||| ||| || || | ||| | |||| | | ||| | |||| Sbjct 922 GTCGGTGGCG-ACGCGTCGCACCCCCTCGTCG---ACGACCGCGTGCTGCTCGGGCGTGC 867 Query 37188 CGGGCTCGAAGGTGTAGGCACCGGGCTTCCCGATCTGGACCAGGTTCCGGTCAGGCGACG 37247 |||| ||| |||||| |||||||| |||| ||| |||||||| ||||| | || || Sbjct 866 CGGGGAGGAACTCGTAGGCTCCGGGCTTTCCGACCTGCACCAGGTTGCGGTCCGCCGCCG 807 Query 37248 GCACGTAGAAGGTCGGGTCGAGCTGCTTGTACCGGCCGCTCTCCTCGTTGTAGCTCCAGC 37307 | ||||||||| ||| |||| | ||||| |||| |||||||||||| | || Sbjct 806 GGACGTAGAAGACCGGCCGCAGCTCCCGGTACCTGCCGGACTCCTCGTTGTA---CGAGG 750 Query 37308 CAGCGCGGTGACGGAACCACTCGCGGGCCACGAACACCGGGGCCTCCACGCGGAAGGTCA 37367 | |||||| || | | |||||| ||||| | ||| |||| ||| ||| |||| Sbjct 749 CGATGCGGTGCCGCATGAATTCGCGGAAGACGAAGATCGGCGCCTGAACGTAGAACGTCA 690 Query 37368 TCGAGCCGTGCTCGAAGGGCGAGCCGTGCCTGTCCCGCATGAGGAAGTTGATCAGGCC 37425 ||||| ||||||||||||||| ||||| | || ||||||||| ||||||||||||| Sbjct 689 TCGAGTTGTGCTCGAAGGGCGACCCGTGTCGATCGCGCATGAGGTAGTTGATCAGGCC 632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163313242626762