Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value seq1626 140 3e-28 >seq1626 Length=4816 Score = 140 bits (154), Expect = 3e-28 Identities = 182/251 (73%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 105036 TTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGGACC---GCATG 105092 ||| |||| |||||| ||||||||||||| || ||| ||||| |||||| |||| Sbjct 2193 TTCCCCGGCTACTTCCTGGTCGTCGCCGACTTCATCAACTGGGCCAAGGACAACGGCATC 2252 Query 105093 CTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACATC 105152 | ||| ||||||||||| ||||| | || || ||| | ||| | ||| ||| |||| Sbjct 2253 CGCGTGGGTCCCGGCCGCGGTTCCGGCGCGGGGTCGATGGTCGCCTACGCCATGCGCATC 2312 Query 105153 ACCGAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGCGG 105212 ||||| ||||||||| || || ||| |||||| ||||| || ||| | || || || Sbjct 2313 ACCGACCTCGACCCGCTCGAGCACGGCCTGATCTTCGAACGCTTCCTGAACCCCGACCGC 2372 Query 105213 AAGAACTTCCCCGACATCGATCTCGACTTCCCGCAGAAGCGTCGCGGCGAGGTCGTCGAC 105272 | |||||| ||||| |||||||| | ||| ||||||||||| ||||| Sbjct 2373 GTCTCGATGCCCGACTTCGATGTCGACTTCGACGACCGGCGCCGCGGCGAGGTGATCGAC 2432 Query 105273 TACATCGCCGA 105283 ||| || |||| Sbjct 2433 TACGTCACCGA 2443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 456039628217720