Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq174 127 2e-24 seq36 113 4e-20 seq961 91.5 1e-13 >seq174 Length=41746 Score = 127 bits (140), Expect = 2e-24 Identities = 321/480 (67%), Gaps = 15/480 (3%) Strand=Plus/Plus Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC 139448 ||||||||| | || ||| ||||||||||||| || | ||||| |||| | | | || Sbjct 20385 GCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGCGTAGAAGAGGTC 20444 Query 139449 GCGCGCCTTCTT-ATCTTCCGAACCCATGTTACGTTT-CATGTTAAGGAAATCAAAAACG 139506 |||||| | | || || || || | | | || | ||||| || || ||| Sbjct 20445 GCGCGCGCGGTGCAGCT--CGTTGCCGTGGTTCTTGCGCAGCTCCAGGAACTCGAACACG 20502 Query 139507 TCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT---TGA 139563 ||||||||||| || ||||| |||||||| | | |||||| || ||||| ||| || Sbjct 20503 TCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGCCTCCTCCCTGG 20562 Query 139564 TCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTT 139623 || || | || | | | |||||| || | || ||| || | ||| | | || | Sbjct 20563 TCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCCCGTTGGATGAT 20622 Query 139624 CCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATT 139683 ||||| |||| |||||| ||||| || |||| || || | | | ||||| || Sbjct 20623 CCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTAATGCCAATA 20682 Query 139684 CCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCTTAT 139742 || ||| | | ||||| || | |||| | || | | || ||||| || || || Sbjct 20683 CCTCCGGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGTGTCGTAAATGCCCTCAAT 20741 Query 139743 GCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGC 139802 |||||||||||| | | ||| || || ||||| || ||||| | ||||||||| Sbjct 20742 CGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCGGCGTGCCGGC 20801 Query 139803 TGCAAACAGAGTAGGACTCGCGTGCGT---GAACATTTGTTTCGACATCAATTCGTACGT 139859 ||| || || || |||||||||| |||||| ||| ||||| | || ||||| Sbjct 20802 GTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGT---GACATGAGCTCATACGT 20858 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 138471 CAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATAC 138530 || || ||||| || || || || || |||| | || | || ||||| |||| || Sbjct 19479 CAGCTCGATCAGCTCCTTCATGAGGTACTTGTTCACGATCGTGAACTCACCAGCCAGCAC 19538 Query 138531 TCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTG 138590 || || ||| ||||| ||| | ||||| | || |||||||| |||| |||||| Sbjct 19539 GCGGCGGTTGTACATGTTCGACGTGTACGGCTCGATGGACTCGTTGTTGCCCAAAATCTG 19598 Query 138591 AGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTT 138650 |||||| | ||| || ||||| ||||| | || || || || | |||| |||| Sbjct 19599 AGCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGTTGCGGATGCCGT---GCTT 19655 Query 138651 GAT-TCGT--TCCTTGAGCGACGACCAGTCCCACAA 138683 ||| ||| |||||||||| | ||| |||||||| Sbjct 19656 GATCACGTTCTCCTTGAGCGCAGCCCAATCCCACAA 19691 >seq36 Length=76722 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || ||||| || || || | | Sbjct 56629 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 56688 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||||||||| || || || || ||||| || Sbjct 56689 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 56748 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||||||||| | | || || || ||| Sbjct 56749 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 56808 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || ||||| ||||||||| |||| | ||||| || Sbjct 56809 ATCCAGAAGGAGTCTACACTGCACTTGGTGCTGCGTCTTCGCGGCGG 56855 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || ||||| || || || | | Sbjct 56401 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCG 56460 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||||||||| || || || || ||||| || Sbjct 56461 GACTCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 56520 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||||||||| | | || || || ||| Sbjct 56521 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 56580 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| |||| |||| || ||| Sbjct 56581 ATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGC 56628 >seq961 Length=10404 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || ||||| | || Sbjct 6819 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTAGAGCCGTCC 6760 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| ||||| || || || || || Sbjct 6759 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 6700 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| ||||| || ||||| ||||| Sbjct 6699 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 6665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449864088252520