Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_022059.1 Length=77367 Score E Sequences producing significant alignments: (Bits) Value seq4983 379 1e-100 seq780 120 2e-22 >seq4983 Length=1217 Score = 379 bits (420), Expect = 1e-100 Identities = 566/797 (71%), Gaps = 21/797 (3%) Strand=Plus/Minus Query 67572 CCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGG 67631 |||||||||| || || |||||| ||| |||||| |||| ||| ||| | |||||| Sbjct 850 CCACCGGCTCCATCGCGTTGGACGTCGCCCTCGGCGTCGGCGGGCTTCCCCGCGGCCGGA 791 Query 67632 TAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGG 67691 | | |||||||||||||| || || || || ||| | ||| | || || ||| | | Sbjct 790 TCATCGAGATCTACGGTCCGGAATCCTCCGGTAAGACCACGCTCACTCTGCATGCGATCG 731 Query 67692 CCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACC 67751 | || | ||| |||| |||| |||||| | |||||||||||| || | ||||||| Sbjct 730 CGAACGTGCAGCGCTCCGGCGGCATCGCCGCGTTCATCGACGCCGAGCACGCGCTCGACC 671 Query 67752 CTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACA 67811 | || |||||| | |||||| || || ||||| || |||| |||||| |||| Sbjct 670 CCGATTACGCCAAGAAGCTCGGAGTCGACATCGACTCGCTGCTGGTGTCGCAGCCCGACA 611 Query 67812 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCA 67871 | || |||||||| || ||||||| ||| | |||||| || || | | | | || Sbjct 610 CGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTCGTCCGCTCGGGAGCGATCGACCTCG 551 Query 67872 TCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGG 67931 | || | ||||| || ||||| || |||||| ||| ||| |||| || || || || | Sbjct 550 TGGTCATCGACTCCGTCGCGGCGCTCGTGCCGAAGGCCGAGATCGAGGGTGAGATGGGCG 491 Query 67932 ACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACC---- 67987 | || |||||||| || || || || || ||||| ||||| | |||||||||||| Sbjct 490 ATTCCCACGTCGGTCTCCAAGCACGGCTCATGTCGCAGGCGCTTCGCAAGCTGACCGGTG 431 Query 67988 GGCACGATTGCCAGCACCAACACGCTCACCCTG---TGGGTGAATCAGCTGCGCGAGAAG 68044 ||| | || ||| || ||||| ||| || | | || ||||||||||||||| Sbjct 430 GGCTCAAT---CAG-ACGAACAC---CACGATGATCTTCATCAACCAGCTGCGCGAGAAG 378 Query 68045 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 68104 ||||| |||| || ||| | ||||||||| ||||||| ||||| ||| ||| Sbjct 377 ATCGG---CGTGTTCTTCGGGTCTCCCGAGACCACCGCCGGTGGAAAGGCGCTGAAGTTC 321 Query 68105 TACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCT 68164 ||||| |||||||| |||| |||| | |||| || ||||| || |||||| Sbjct 320 TACGCGTCGGTGCGCCTGGACATCCGTCGTATCGAGACGCTCAAGGACGGTACCGAGGCT 261 Query 68165 GTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAG 68224 || |||||||||||||| || || || |||||||||||| ||||||| ||| | ||| Sbjct 260 GTGGGCAACCGCACGCGGGTCAAAGTCGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAG 201 Query 68225 GCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCCGAA--CTCCTCGACA 68282 || ||||| |||| ||||||||| || || || || |||| ||| ||| |||| Sbjct 200 GCCGAGTTCGACATCCTCTACGGCGTCGGTATCTCGCGAGAGG--GAAGCCTCATCGATT 143 Query 68283 TGGCCGTTTCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGA 68342 | | ||| | ||| || | |||||||| || ||||||| || ||||| | || Sbjct 142 TCGGCGTCGAGCACGGGATCGTGAAGAAGTCGGGCGCCTGGTACACGTACGACGGGGAGC 83 Query 68343 ACATCGGCCAGGGCAAG 68359 | |||||||||||||| Sbjct 82 AGCTCGGCCAGGGCAAG 66 >seq780 Length=13225 Score = 120 bits (132), Expect = 2e-22 Identities = 381/588 (65%), Gaps = 12/588 (2%) Strand=Plus/Plus Query 67628 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 67687 || || |||||||||||||| |||||| || || ||| | |||||| || | Sbjct 7411 CGAGTGGTGGAGATCTACGGCCCTGAGAGCTCTGGCAAGACGACGTTGGCACTGAGCTGC 7470 Query 67688 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 67744 | || | || || ||| ||| ||| | |||| |||||| || || || || Sbjct 7471 ATTGCGGAGGCTCAAAAGACCGAGGGCGGGGTGTGTGCCTTCATCGATGCTGAGCACGCT 7530 Query 67745 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 67804 | || | | |||||| ||| || || || || | ||| || || |||| Sbjct 7531 ATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGACATTGACGCGCTGTACGTCTCGCAG 7590 Query 67805 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 67864 || ||| | || || | || ||||| |||| ||| ||| || ||||| | ||| Sbjct 7591 CCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGACACGCTCATCCGATCTGGAGCGGTG 7650 Query 67865 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 67924 | || | || ||||| ||||||||| || |||||||| || ||||| || || || Sbjct 7651 GACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTGCCGCGTGCCGAGCTTGAGGGCGAG 7710 Query 67925 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 67984 || || ||| ||| | | ||||| || || | ||| || || |||||||||| Sbjct 7711 ATGGGAGACCAGCAGATTGCGCTGCAAGCGCGATTAATGAGCCAAGCTCTGCGCAAGCTC 7770 Query 67985 ACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAG 68044 || || || | ||| ||||| || | | |||| ||| | ||| ||||| Sbjct 7771 ACGGGGTCGCTGTCCAAGTCCAACTGCACCATTATCTTCCTGAACCAGATCCGCCAGAAG 7830 Query 68045 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 68104 | |||| | || ||| | |||| ||| | ||||| | || |||||| Sbjct 7831 GTGGGCATTAT---CTTCGGATCTCCTGAGGTCACGTCGGGTGGCACAGCGTTGCGCTAT 7887 Query 68105 TACGCCTCGGTGCGTATGGATGT---CCGCAGGATCGCCACCGAGAAGGAAGGCGATGAG 68161 ||||| || ||||| |||| | ||||| || || | | ||||||||||| || Sbjct 7888 TACGCGTCCGTGCGCCTGGACATTCGCCGCAAGACGGCTATC---AAGGAAGGCGACCAG 7944 Query 68162 GCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCG 68209 |||||||||| ||| ||||||||| | |||||||||||||||| Sbjct 7945 ATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAGAACAAGCTGGCG 7992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247431628895472