Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq961 129 4e-25 seq36 120 2e-22 seq257 116 2e-21 seq678 111 1e-19 seq37 107 1e-18 >seq961 Length=10404 Score = 129 bits (142), Expect = 4e-25 Identities = 148/197 (75%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| |||||||| || |||| | || || || ||||| |||||||||| Sbjct 6630 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6689 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| |||| | || |||||||| | ||||| || ||||| || Sbjct 6690 TCAGGCGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTGAC--AT- 6746 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || || | ||| || || | || |||||||| ||||| |||||||| Sbjct 6747 -TGTCAATGCTGTCGGACGGCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTC 6805 Query 34964 ACAAAGATCTGCATGAT 34980 ||||||||||||||||| Sbjct 6806 ACAAAGATCTGCATGAT 6822 >seq36 Length=76722 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 56613 CAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTC 56554 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 56553 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 56494 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || || ||| | || || || | ||| || || | || ||||| Sbjct 56493 TTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGT 56434 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| | ||||| || |||||||||||| Sbjct 56433 CTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 56400 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 56841 CAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTC 56782 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 56781 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 56722 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || || ||| | || || || | ||| || || | || ||||| Sbjct 56721 TTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATGGT 56662 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| | ||||| || |||||||||||| Sbjct 56661 CTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 56628 >seq257 Length=32862 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 131 CAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 190 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||| ||||| || |||||||| |||| | || |||||||| Sbjct 191 TTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 250 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || || ||| | ||||| || | ||| || || | ||| || || Sbjct 251 CTGAATTTTCTGCTTCACGTTGTCGATCGAGTCTGACGGCTCCACGTCCAAGGTGATCGT 310 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| | ||||| ||||||||||||||| Sbjct 311 CTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 344 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || |||||||| ||||| ||||| || |||| | || Sbjct 359 CAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 418 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||| ||||| || |||||||| |||| | || |||||||| Sbjct 419 TTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 478 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || || ||| | ||||| || | ||| || || | ||| || || Sbjct 479 CTGAATTTTCTGCTTCACGTTGTCGATCGAGTCTGACGGCTCCACGTCCAAGGTGATCGT 538 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| | ||||| || ||||||||||| Sbjct 539 CTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 571 >seq678 Length=15758 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || |||||||| ||||| ||||| || |||| | || Sbjct 15094 CAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 15153 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||| ||||| || |||||||| |||| | || |||||||| Sbjct 15154 TTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 15213 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || || ||| | ||||| || | ||| || || | ||| || || Sbjct 15214 CTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAAGGTGATCGT 15273 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| | ||||| ||||||||||||||| Sbjct 15274 CTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 15307 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 15322 CAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 15381 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||| ||||| || |||||||| |||| | || |||||||| Sbjct 15382 TTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 15441 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || || ||| | ||||| || | ||| || || | ||| || || Sbjct 15442 CTGAATTTTCTGCTTCACGTTGTCGATCGAGTCTGACGGCTCCACGTCCAAGGTGATCGT 15501 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| | ||||| || |||||||||||| Sbjct 15502 CTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 15535 >seq37 Length=75809 Score = 107 bits (118), Expect = 1e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||||||||||||||||||| |||||||| || |||| | || Sbjct 35978 CAGCACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTC 36037 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 36038 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 36076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325669146458621