Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_022976.1 Length=75894 Score E Sequences producing significant alignments: (Bits) Value seq4983 446 8e-121 seq780 143 1e-29 >seq4983 Length=1217 Score = 446 bits (494), Expect = 8e-121 Identities = 586/807 (73%), Gaps = 15/807 (2%) Strand=Plus/Minus Query 66079 GTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTAC 66138 || || ||||| |||||||||| ||||| |||||| ||| || ||| |||| ||| Sbjct 863 GTCGAGGTCATCTCCACCGGCTCCATCGCGTTGGACGTCGCCCTCGGCGTCGGCGGGCTT 804 Query 66139 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 66198 || | |||||| | | || |||||||| || ||||| || || ||| | || || | Sbjct 803 CCCCGCGGCCGGATCATCGAGATCTACGGTCCGGAATCCTCCGGTAAGACCACGCTCACT 744 Query 66199 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 66258 || || ||| | || || | |||| |||| |||| |||||| | ||||||||| ||| Sbjct 743 CTGCATGCGATCGCGAACGTGCAGCGCTCCGGCGGCATCGCCGCGTTCATCGACGCCGAG 684 Query 66259 CACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 66318 ||| | || |||||||| ||||||||| |||||| || ||| ||||| || ||||| Sbjct 683 CACGCGCTCGACCCCGATTACGCCAAGAAGCTCGGAGTCGACATCGACTCGCTGCTGGTG 624 Query 66319 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 66378 ||||| ||||| || |||||||| || ||||||| ||| | |||||| || || Sbjct 623 TCGCAGCCCGACACGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTCGTCCGCTCGGGA 564 Query 66379 GAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 66438 | | | | |||| ||| | ||||| || ||||| || |||||| |||||| |||| Sbjct 563 GCGATCGACCTCGTGGTCATCGACTCCGTCGCGGCGCTCGTGCCGAAGGCCGAGATCGAG 504 Query 66439 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 66498 || || || || || |||||||| || || || || |||||||||||||| | ||| Sbjct 503 GGTGAGATGGGCGATTCCCACGTCGGTCTCCAAGCACGGCTCATGTCGCAGGCGCTTCGC 444 Query 66499 AAGCTCACC----GGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTT 66554 ||||| ||| ||| | || ||| || ||||| || | ||| |||||||| | Sbjct 443 AAGCTGACCGGTGGGCTCAAT---CAG-ACGAACACCACGATGATCTTCATCAACCAGCT 388 Query 66555 GCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGC 66614 ||||||||||||||| |||| || ||| | ||||||||| | || |||||||| Sbjct 387 GCGCGAGAAGATCGG---CGTGTTCTTCGGGTCTCCCGAGACCACCGCCGGTGGAAAGGC 331 Query 66615 TTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGG 66674 ||| ||||||||| || || ||| |||| ||||||| |||| || ||||| || Sbjct 330 GCTGAAGTTCTACGCGTCGGTGCGCCTGGACATCCGTCGTATCGAGACGCTCAAGGACGG 271 Query 66675 CGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCC 66734 |||||||| ||||||||||| ||||| |||||||||||||||||| |||| ||||| Sbjct 270 TACCGAGGCTGTGGGCAACCGCACGCGGGTCAAAGTCGTCAAGAACAAGATGGCGCCGCC 211 Query 66735 GCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAA-- 66792 | | | ||||||||| | || | ||||| | || |||||||| |||| ||| Sbjct 210 GTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGTATCTCGCGAGAGG--GAAGC 153 Query 66793 CTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTAC 66852 ||| |||| | | ||| ||| || | |||||||||||||||||||||| || |||| Sbjct 152 CTCATCGATTTCGGCGTCGAGCACGGGATCGTGAAGAAGTCGGGCGCCTGGTACACGTAC 93 Query 66853 GGGGACAAGAACGTCGCCCAGGGCAAG 66879 | | || | ||| |||||||||| Sbjct 92 GACGGGGAGCAGCTCGGCCAGGGCAAG 66 >seq780 Length=13225 Score = 143 bits (158), Expect = 1e-29 Identities = 331/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 66241 GCCTACATCGACGCTGAGCACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGAC 66300 |||| |||||| ||||||||| | | || || | ||||||||||| || ||||| ||| Sbjct 7507 GCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 7566 Query 66301 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66360 | ||| || || ||||||||| | || || | || ||||| |||| ||| Sbjct 7567 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGAC 7626 Query 66361 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 66420 ||| || ||||| | | || | |||| || | ||| ||||||||| || ||| Sbjct 7627 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 7686 Query 66421 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 66480 ||||| |||||||| || ||||| || || ||| || | | ||||| ||||| | Sbjct 7687 CCGCGTGCCGAGCTTGAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCAAGCGCGATTA 7746 Query 66481 ATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACG 66537 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 7747 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 7804 Query 66538 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACC 66597 ||| | |||||| | ||| ||||| | |||| | || ||| | |||| | Sbjct 7805 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 7860 Query 66598 ACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 66657 || |||| || | || ||| | | ||||| || || ||| |||| | || |||| Sbjct 7861 ACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAAG 7920 Query 66658 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAG 66717 | | ||||||||||| || |||||||||| || ||||| || | |||| Sbjct 7921 ACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 7980 Query 66718 AACAAGCTGGCCCCGCC 66734 ||||||||||| |||| Sbjct 7981 AACAAGCTGGCGTCGCC 7997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242718371222145