Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_022981.1 Length=76323 Score E Sequences producing significant alignments: (Bits) Value seq4983 432 2e-116 seq780 147 1e-30 >seq4983 Length=1217 Score = 432 bits (478), Expect = 2e-116 Identities = 583/807 (72%), Gaps = 15/807 (2%) Strand=Plus/Minus Query 66335 GTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTAC 66394 || || ||||| |||||||||| ||||| |||||| ||| || ||| |||| ||| Sbjct 863 GTCGAGGTCATCTCCACCGGCTCCATCGCGTTGGACGTCGCCCTCGGCGTCGGCGGGCTT 804 Query 66395 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 66454 || | |||||| | | || |||||||| || ||||| || || ||| | || || | Sbjct 803 CCCCGCGGCCGGATCATCGAGATCTACGGTCCGGAATCCTCCGGTAAGACCACGCTCACT 744 Query 66455 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 66514 || || ||| | || || | |||| |||| |||| |||||| | ||||||||| ||| Sbjct 743 CTGCATGCGATCGCGAACGTGCAGCGCTCCGGCGGCATCGCCGCGTTCATCGACGCCGAG 684 Query 66515 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 66574 ||| | || ||||| || ||||||||| |||||| || ||| ||||| || ||||| Sbjct 683 CACGCGCTCGACCCCGATTACGCCAAGAAGCTCGGAGTCGACATCGACTCGCTGCTGGTG 624 Query 66575 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 66634 ||||| ||||| || |||||||| || ||||||| ||| | |||||| || || Sbjct 623 TCGCAGCCCGACACGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTCGTCCGCTCGGGA 564 Query 66635 GAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 66694 | | | | |||| ||| | ||||| || ||||| || |||||| |||||| |||| Sbjct 563 GCGATCGACCTCGTGGTCATCGACTCCGTCGCGGCGCTCGTGCCGAAGGCCGAGATCGAG 504 Query 66695 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 66754 || || || || || |||||||| || || || || |||||||||||||| | ||| Sbjct 503 GGTGAGATGGGCGATTCCCACGTCGGTCTCCAAGCACGGCTCATGTCGCAGGCGCTTCGC 444 Query 66755 AAGCTCACC----GGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTT 66810 ||||| ||| ||| | || ||| || ||||| || | ||| |||||||| | Sbjct 443 AAGCTGACCGGTGGGCTCAAT---CAG-ACGAACACCACGATGATCTTCATCAACCAGCT 388 Query 66811 GCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGC 66870 ||||||||||||||| |||| || ||| | ||||||||| | || || ||||| Sbjct 387 GCGCGAGAAGATCGG---CGTGTTCTTCGGGTCTCCCGAGACCACCGCCGGTGGAAAGGC 331 Query 66871 TTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGG 66930 ||| ||||||||| || || ||| |||| ||||||| |||| || ||||| || Sbjct 330 GCTGAAGTTCTACGCGTCGGTGCGCCTGGACATCCGTCGTATCGAGACGCTCAAGGACGG 271 Query 66931 CGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66990 |||||||| ||||||||||| ||||| || ||||||||||||||| |||| ||||| Sbjct 270 TACCGAGGCTGTGGGCAACCGCACGCGGGTCAAAGTCGTCAAGAACAAGATGGCGCCGCC 211 Query 66991 GCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAA-- 67048 | | | ||||||||| | || | ||||| | || |||||||| |||| ||| Sbjct 210 GTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGTATCTCGCGAGAGG--GAAGC 153 Query 67049 CTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTAC 67108 ||| |||| | | ||| ||| || | |||||||||||||||||||||| || |||| Sbjct 152 CTCATCGATTTCGGCGTCGAGCACGGGATCGTGAAGAAGTCGGGCGCCTGGTACACGTAC 93 Query 67109 GGGGACAAGAACGTCGCCCAGGGCAAG 67135 | | || | ||| |||||||||| Sbjct 92 GACGGGGAGCAGCTCGGCCAGGGCAAG 66 >seq780 Length=13225 Score = 147 bits (162), Expect = 1e-30 Identities = 332/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 66497 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66556 |||| |||||| ||||||||| | | || | | ||||||||||| || ||||| ||| Sbjct 7507 GCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 7566 Query 66557 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66616 | ||| || || ||||||||| | || || | || ||||| |||| ||| Sbjct 7567 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGAC 7626 Query 66617 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 66676 ||| || ||||| | | || | |||| || | ||| ||||||||| || ||| Sbjct 7627 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 7686 Query 66677 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 66736 ||||| |||||||| || ||||| || || ||| || | | ||||| ||||| | Sbjct 7687 CCGCGTGCCGAGCTTGAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCAAGCGCGATTA 7746 Query 66737 ATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACG 66793 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 7747 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 7804 Query 66794 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACC 66853 ||| | |||||| | ||| ||||| | |||| | || ||| | |||| | Sbjct 7805 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 7860 Query 66854 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 66913 || |||| |||| || ||| | | ||||| || || ||| |||| | || |||| Sbjct 7861 ACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAAG 7920 Query 66914 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 66973 | | ||||||||||| || |||||||||| || |||||||| | |||| Sbjct 7921 ACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 7980 Query 66974 AACAAGCTGGCCCCGCC 66990 ||||||||||| |||| Sbjct 7981 AACAAGCTGGCGTCGCC 7997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244091071522116