Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_023694.1 Length=78064 Score E Sequences producing significant alignments: (Bits) Value seq4945 125 4e-24 >seq4945 Length=1226 Score = 125 bits (138), Expect = 4e-24 Identities = 328/488 (67%), Gaps = 13/488 (3%) Strand=Plus/Plus Query 64744 GGCCTGATGAACTTCTTGATGGCGGGA-CGACACGGCTCTCCCTTCGAGCACGGGCTGAT 64802 |||||||| |||| | | ||| || || |||||||| || |||||||||||| ||| Sbjct 632 GGCCTGATCAACTACCTCATG-CGCGATCGACACGGGTCGCCCTTCGAGCACAACTCGAT 690 Query 64803 GAGCTTCCG-GATCACCGCACCCATATTTGTGTGGCGTGAGTTCATGCGCCATCGAATCG 64861 || ||| | ||| || || || || || | || || |||||||| || || |||| Sbjct 691 GACGTTCTACGTTCAG-GCGCCGATCTTCGTCTTCCGCGAATTCATGCGGCACCGCATCG 749 Query 64862 GATTCTCGTACAACGAGCAGTCCGGTCGATACATGGAGCTGTTGCCGGTCTTCTATATTC 64921 ||||||||||||| ||||||| | ||| ||||||| |||||||||||| | | Sbjct 750 C---CTCGTACAACGAGGAGTCCGGCAGGTACCGGGAGCTGCGGCCGGTCTTCTACGTCC 806 Query 64922 CGCCGACCGATCGTCCTCTGGTTCAGATCGGCAAGGCTGGACACTACACGCTCATCGGTG 64981 || || | || || ||||| ||| |||| ||| | ||| |||| | || || | Sbjct 807 CGGCGGCGGACCGCAACCTGGTGCAGGTCGGAAAGCCCGGAGCCTACGAGTTCCTCCCCG 866 Query 64982 GCACGCAGGCTCAGCACGAGTTCTGTGTCGA--GTCTTCGACGACGGCATATTTGGCTGC 65039 |||||| | ||||||| | || | ||| | | ||||| || | | | || Sbjct 867 GCACGCCCGAGCAGCACGCGGTCGTCGACGAGGGGGTGCGACG-CGTCGCCACCGAC-GC 924 Query 65040 TTGGAAGAGCTACAAGGAGCAGCTTG-GTCGCGGCATCGCCAAGGAGGTGGCACGTGAGG 65098 | ||| |||| || | ||| | | || ||| |||| |||||||| ||| | Sbjct 925 ATTCGAGACCTACCAGCGGATGCTGGCGGCG-GGCGTCGCGCGAGAGGTGGCCCGTATCG 983 Query 65099 TGCTGCCTGTGGCGACATATTCTTCGGCCTATGTGACTTGCAATCCCCGTTCGATGATGA 65158 ||||||| || | || || ||| || || || ||| | || ||| |||||| Sbjct 984 TGCTGCCGCTGAACATCTACTCCTCGATGTACGTCACCATGAATGCGCGGTCGCTGATGA 1043 Query 65159 GCTTCCTCTCTCTTCGCACCAAGGACGAGGACTCGATGTTCCCGTCATATCCTCAGTGGG 65218 |||||| ||||| |||||||||| ||||| ||||| || | || ||| | | Sbjct 1044 ACTTCCTGTCTCTGCGCACCAAGGCCGAGGGGAGCCACTTCCCCTCCTTCCCGCAGCGCG 1103 Query 65219 AGATCGAG 65226 |||||||| Sbjct 1104 AGATCGAG 1111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 249661866911975