Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_023735.1 Length=76797 Score E Sequences producing significant alignments: (Bits) Value seq4945 154 7e-33 >seq4945 Length=1226 Score = 154 bits (170), Expect = 7e-33 Identities = 348/511 (68%), Gaps = 13/511 (3%) Strand=Plus/Plus Query 63895 GGCCTGATGAACTTCCTCATGTCCGGACGACATGGCTCTCCGTTCGAGCACGGTCTGATG 63954 |||||||| |||| ||||||| || ||||| || || || ||||||||| |||| Sbjct 632 GGCCTGATCAACTACCTCATGCGCGATCGACACGGGTCGCCCTTCGAGCACAACTCGATG 691 Query 63955 AGCTTC--CGAATCACGGCGCCCATATTCGTGTGGCGTGAGTTCATGCGCCATCGCATCG 64012 | ||| || ||| |||||| || ||||| | || || |||||||| || ||||||| Sbjct 692 ACGTTCTACGT-TCA-GGCGCCGATCTTCGTCTTCCGCGAATTCATGCGGCACCGCATCG 749 Query 64013 GCTTCTCGTACAACGAACAGTCGGGTCGCTACATGGAGTTGCTGCCGGTCTTCTATATTC 64072 || |||||||||| |||| || | ||| |||| ||| |||||||||||| | | Sbjct 750 CCT---CGTACAACGAGGAGTCCGGCAGGTACCGGGAGCTGCGGCCGGTCTTCTACGTCC 806 Query 64073 CGCCGGCTCATCGTCCACTGGTCCAGATCGGAAAGGCTGGCGCCTACACCTTCGTAGATG 64132 || |||| | || ||||| ||| |||||||| | || |||||| ||| | | Sbjct 807 CGGCGGCGGACCGCAACCTGGTGCAGGTCGGAAAGCCCGGAGCCTACGAGTTCCTCCCCG 866 Query 64133 GTACGGACGAGCAGCACG-AAACCACGATCGAAGAGCTTCGAATCGCTTACACGTGGGCA 64191 | ||| ||||||||||| | ||| ||| | | | ||| || ||| ||| Sbjct 867 GCACGCCCGAGCAGCACGCGGTCGTCGA-CGAGGGGGTGCGACGCGTCGCCACCGACGCA 925 Query 64192 TGGGATTCCTACCGAAACATGCTCAACCGAGGG-ATCGCCAAGGAAGTGGCTCGAATCTG 64250 | || |||||| ||||| | | ||| |||| || ||||| || ||| Sbjct 926 TTCGAGACCTACCAGCGGATGCT-GGCGGCGGGCGTCGCGCGAGAGGTGGCCCGTATCGT 984 Query 64251 TTTGCCTGTGGCGACATATTCTTCGGCCTACGTAACGTGTAATCCGCGTTCGATGATGAG 64310 |||| || | || || ||| ||||| || ||| |||| ||| |||||| Sbjct 985 GCTGCCGCTGAACATCTACTCCTCGATGTACGTCACCATGAATGCGCGGTCGCTGATGAA 1044 Query 64311 CTTCCTGTCTCTGCGAACCAAGGAGGAGGGGTCCAAGTTCCCGTCATATCCTCAGTGGGA 64370 ||||||||||||||| ||||||| |||||| | | ||||| || | || ||| | || Sbjct 1045 CTTCCTGTCTCTGCGCACCAAGGCCGAGGGGAGCCACTTCCCCTCCTTCCCGCAGCGCGA 1104 Query 64371 GATCGAACAGGTGGCTCGA-AAGATGGAAGC 64400 ||||| | | ||| ||| |||||||| || Sbjct 1105 GATCG-AGATGTGCGCCGAGAAGATGGAGGC 1134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 245607761364042