Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq2784 104 2e-17 seq1747 86.0 4e-12 >seq2784 Length=2382 Score = 104 bits (114), Expect = 2e-17 Identities = 135/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 94422 CTCGATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGC-GCCCCCA 94480 ||||||||| | ||| ||| |||||||||| | |||||||| || || | |||| Sbjct 184 CTCGATCTCGGCCTCGCTGACCCACGCGCCCTGCACGCGGATGGC-CTTCGAAGTGCCCA 126 Query 94481 CCGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGA 94540 ||||||||| | ||||| ||| || |||||| | ||||| ||| || ||| |||| Sbjct 125 TCGGCAGGAACAGTCCGTCTCCCTGCCCGATGAGCCGGTCGGCACCGGGCTGGTCGAGGA 66 Query 94541 TCACCCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCT 94600 | || ||| |||||||| | || |||||||| |||||||||||||| || || Sbjct 65 TGACGCGGGAATCGGTGACGCTCGTGACGGCGAACGCGAGCCGCGAGGGCACAATGGCCT 6 Query 94601 TGAT 94604 |||| Sbjct 5 TGAT 2 >seq1747 Length=4394 Score = 86.0 bits (94), Expect = 4e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 94998 CATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGG 95057 ||| ||||||| |||||| ||||||||||| ||||| | || ||||||||||| || || Sbjct 472 CATCGAGTTGACGAAGCTCGACTTGCCCGACCCGGTGGAACCGGCCACCAGCAGGTGGGG 531 Query 95058 CATCTTGGCCAGGTTCAGGGAGACGTCCTTACCCTCGACGTCCTTGCCCACTGCCACGGT 95117 |||||| || |||||| ||||| || |||| |||||||| || | | ||| Sbjct 532 CATCTTCGCGAGGTTCGCCACGACGTAGCCGCCACCGACATCCTTGCCGACACCGATGGT 591 Query 95118 CAACGGATGG 95127 || || ||| Sbjct 592 CATGGGGTGG 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340096898562512