Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq174 183 3e-41 seq678 96.9 3e-15 seq257 91.5 1e-13 seq36 91.5 1e-13 >seq174 Length=41746 Score = 183 bits (202), Expect = 3e-41 Identities = 627/964 (65%), Gaps = 25/964 (3%) Strand=Plus/Plus Query 147459 GGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTT 147517 ||| | ||||||||| ||||| || ||| ||| |||| || || |||||| || || | Sbjct 20073 GGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAATCT 20131 Query 147518 CGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGC 147577 || ||||| |||||| | || || | || ||||| || || || ||| Sbjct 20132 CGCAGCACAAGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGG 20191 Query 147578 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---A 147634 |||||| ||| | |||||| |||| |||| ||||| | |||| || | ||| | Sbjct 20192 CCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGA 20251 Query 147635 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCT 147694 ||| ||| | ||| || | | || || ||| ||||| || |||||| || Sbjct 20252 ACCA---CAGCTGCTGGGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCT 20308 Query 147695 CGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGAC 147754 |||||| ||| ||||||||||| |||| ||| || ||||| || || || | Sbjct 20309 CGTACAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGC 20368 Query 147755 ACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814 | | || |||| || ||| ||| | || || ||| |||||||| || ||||||| Sbjct 20369 AGAAAAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACA 20428 Query 147815 GCGCGTACATAAGATCGCGCGCTT--TGCAA-TCCTCGGCGCCCATGTTGCGTTTCAAAT 147871 | ||||| | || |||||||| |||| || | | || | ||||| || | Sbjct 20429 GAGCGTAGAAGAGGTCGCGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTGCG---CAGCT 20485 Query 147872 TAAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTA 147930 || | | | | | | ||| |||||||| || || | ||||| ||| | || ||||| Sbjct 20486 CCAGGAACTCGA-ACACGTCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTG 20544 Query 147931 CGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGT 147987 ||||| ||| |||||||| |||| ||| || ||| || || || | || |||||| Sbjct 20545 CGCTTGCCTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGG 20604 Query 147988 TCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG 148047 | ||| | | | ||||| ||| ||| | |||| ||| || | | | Sbjct 20605 ATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTG 20664 Query 148048 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA---T 148104 |||| ||| |||||| || ||| | |||| || ||| ||||| | || | | Sbjct 20665 TGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGT 20723 Query 148105 GTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATT 148164 ||||| | ||||| || || ||||| | | | | |||| |||||||| ||| Sbjct 20724 GTCGT--AAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGC 20781 Query 148165 TGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGA 148224 |||||| | |||| || || || || ||||| ||||||||||||| || | || Sbjct 20782 TGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGT 20841 Query 148225 CTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCG 148284 ||| | |||||| | | || | | |||||| | |||||| |||||||| Sbjct 20842 GACATGAGCTCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCC 20901 Query 148285 ACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATAT 148344 |||||||||| ||| ||||| || || || | || | | ||| | || || || Sbjct 20902 ACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTACCGTTCACGCGGAAGAGGTAG 20961 Query 148345 CCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATG 148404 || || || || ||| | || ||||| | ||| ||||| || | |||| |||| Sbjct 20962 CCTCGCTCAAGCGTCTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATG 21021 Query 148405 GCCG 148408 |||| Sbjct 21022 GCCG 21025 >seq678 Length=15758 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 15313 ACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 15372 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| ||||| || || | | || || ||||| || || || || ||||| Sbjct 15373 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 15432 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| || |||| | || | | || | ||||||||| || | Sbjct 15433 TTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCTGACGGCTCCACGTCCAA 15492 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| || || |||| ||| || | ||| ||||||||| Sbjct 15493 GGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 15535 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | || || || || |||||||||||||||| || Sbjct 15085 ACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGT 15144 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| ||||| || || | | || || ||||| || || || || ||||| Sbjct 15145 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 15204 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| || |||| | || | | || | ||||||||| || | Sbjct 15205 TTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAA 15264 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| || || |||| ||| || | || ||||||||| Sbjct 15265 GGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 15307 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 15541 ACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 15600 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| ||||| || || | | || || ||||| || || || || ||||| Sbjct 15601 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 15660 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| || |||| | || | | || | ||||||||| || | Sbjct 15661 TTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCTGACGGCTCCACGTCCAA 15720 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCT 132119 || | ||| || || |||| ||| || | ||| |||| Sbjct 15721 GGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCT 15758 >seq257 Length=32862 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 122 ACGCAGACGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 181 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| ||||| || || | | || || ||||| || || || || ||||| Sbjct 182 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 241 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| || |||| | || | | || | ||||||||| || | Sbjct 242 TTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCTGACGGCTCCACGTCCAA 301 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| || || |||| ||| || | || ||||||||| Sbjct 302 GGTGATCGTCTTGCCCGTCAAAGTCTTCACAAAGATCTGCATG 344 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | || || || || |||||||||||||||| || Sbjct 350 ACGCAGACGCAGCACCAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTCAGCGT 409 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| ||||| || || | | || || ||||| || || || || ||||| Sbjct 410 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCC 469 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| || |||| | || | | || | ||||||||| || | Sbjct 470 TTCCTTGTCCTGAATTTTCTGCTTCACGTTGTCGATCGAGTCTGACGGCTCCACGTCCAA 529 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || |||| ||| || | ||| |||||||| Sbjct 530 GGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 571 >seq36 Length=76722 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | ||||| || || |||||||||||||||| || Sbjct 56622 ACGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 56563 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| |||||||| || || || || ||||| Sbjct 56562 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCC 56503 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||||| || |||| | || | | || | |||||||| || | Sbjct 56502 CTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAG 56443 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | || || || |||| || || | ||| ||||||||| Sbjct 56442 CGTGATGGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 56400 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | ||||| || || |||||||||||||||| || || Sbjct 56843 CGCAGCACCAAGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 56784 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| |||| |||||||| || || || || ||||| || || Sbjct 56783 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTG 56724 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || |||| | || | | || | |||||||| || | ||| | Sbjct 56723 TCTTGGATTTTCTGCTTCACGTTGTCGATGGAGTCCGAAGGCTCCACGTCCAGCGTGATG 56664 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || |||| || || | ||| ||||||||| Sbjct 56663 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 56628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476575698423240