Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq174 242 5e-59 seq4140 183 4e-41 seq118 98.7 1e-15 seq4595 91.5 2e-13 >seq174 Length=41746 Score = 242 bits (268), Expect = 5e-59 Identities = 1120/1754 (64%), Gaps = 76/1754 (4%) Strand=Plus/Plus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| |||||||||||||||| ||||||||| || | ||||| || | || ||| Sbjct 19209 GTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAGCTT 19268 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 | | || || | ||| | ||||| ||| || ||| || || Sbjct 19269 GCTAATCGTCGGGTCGGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATGTAGGCGCC 19328 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 || ||||||| || || | ||| ||||| |||||| |||||||| ||| |||| Sbjct 19329 ACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 19388 Query 118022 GTTCTTAATATCATCTGGGATA---TCCACGATATTTTGGATGGATCCACCCGCCTTGAC 118078 | ||| | | || || || | ||| || || | ||| ||||| | | Sbjct 19389 CTCCTTGACCTGGTCCGGAATGGATTTCACC---TTCTGCACGGAGCCACCGTCAGCCAG 19445 Query 118079 CATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 118138 || | | || || | ||||| || | || | || |||| || ||| | Sbjct 19446 AATCTGGTTGCGCACCTCAGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATGAGGTA 19505 Query 118139 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTA 118198 ||| || || | |||||||| || || ||| | || || || | |||||| Sbjct 19506 CTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTGTA 19565 Query 118199 TGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGC 118258 ||||| | | |||| ||||| ||||| || || || || || || |||||||| || || Sbjct 19566 CGGCTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGC 19625 Query 118259 CATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTC 118318 || ||| || ||| |||| || | | | | | |||||||| || |||| || Sbjct 19626 CACGAGGAGCGAGTTGCGGATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGCCCAATC 19685 Query 118319 GTAGTTG-----AG-CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 118372 | | || | || | ||| ||||| || ||||||| |||||| | | Sbjct 19686 CCACAAGCCCGAAGACGGGGTGACGCCC---CACATGTCGAACTGGAAGATACCCTTGCT 19742 Query 118373 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC 118432 || |||||||||| || ||||| || |||||| | |||| | || | || | Sbjct 19743 GGCAGGCGATCCCTGGAACGTCTCGTACGGGCCC---AGCTCC------TTGGCGATCTC 19793 Query 118433 C-TCGAGGGCT--------GCGTGATACATTGTTTCAAAAATGCGAGCATTCAT--TGCC 118481 | |||||| || |||| || || || || || ||| ||||| || Sbjct 19794 CATCGAGGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATG------TTCATGTTGAG 19847 Query 118482 TT---GGCCTCGTCGGAA-TCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGA 118535 || || || | || || ||||| ||| || | |||||| ||||||||||| Sbjct 19848 TTCACGGGCTTGCGGGCTCTCGAACGCATAGTT--CATGAGGATAAATGCATCCGCGAGA 19905 Query 118536 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG 118595 || ||||| || | |||| ||||| || | ||| || ||||| || || ||||||| Sbjct 19906 CCCTGGACGCCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCCTCCACG 19965 Query 118596 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 118655 || || | || || || ||| | || | || ||| || ||||| || | || Sbjct 19966 GGGTAGTAGTTGACGTCAATGACCTTGTTCAAGTTCCGGGTCACCACCTTGGTCACCTCG 20025 Query 118656 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 118715 | ||||| | ||| | || | || | || | ||| |||| || ||||| | Sbjct 20026 TACAGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACAAACTTGGGGAGGGCCACA 20079 Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 |||||||| || ||||| | |||||| |||||||| ||||| || |||| Sbjct 20080 GACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCAC 20139 Query 118776 AAGTTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832 ||||| ||| || ||||| | ||||| || || ||||| ||| ||| Sbjct 20140 AAGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCG 20196 Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892 |||||||| |||||| | ||| |||||||| | || | | || || || ||| Sbjct 20197 TCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGCGCGTCCAGGATGGCGAACCA- 20255 Query 118893 ACATCGGCAGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 || | || | |||| | | | ||| || |||||||| | ||||||||| ||| Sbjct 20256 -CAGCTGCTG--GGCATTGATCGTCTTGCGCGCGCGCCCCTCCTTCTCGTACTTCTCGTA 20312 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 || | || ||||| || ||| | ||| |||| || || |||| || |||||||| Sbjct 20313 CAGAGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCATTGGGGCAGAA 20372 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 || ||| | || | | || || ||||||||||| || || |||| ||| || || Sbjct 20373 AAGGCTCCACTTGCCGTTCGCTTCCACACGCTTCATGAACAGATCGGGGACCCACAGAGC 20432 Query 119069 CGAGAAGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 119127 ||||||| || || || | || | || | || || || |||| ||||| | Sbjct 20433 GTAGAAGAGGTCGCGCGCGCGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGCTCCAGGA 20491 Query 119128 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---AC 119184 | || | | || ||||||||||| |||||||| | |||| || || || || | Sbjct 20492 ACTCGAACACGTCAGCGTGCCACGGCTCCAGGTAGATGGCGAACGAGCCTTTGCGCTTGC 20551 Query 119185 GACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATAC 119244 || |||||| ||||| | || ||| | || || || | ||||| || ||||| | Sbjct 20552 CTCCTCCCTGGTCCACATAGCGGGCCGTGTCATTGAAGACCCTCAGCATGGGGATGATCC 20611 Query 119245 CATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGT 119304 | | |||| || || || || || || || |||| | || | ||| || Sbjct 20612 CGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATAC 20671 Query 119305 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 119364 || |||||||| || |||||||| ||||| |||||||| | |||| || |||| | Sbjct 20672 TAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAA 20731 Query 119365 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGG 119424 | || || |||||||| ||| | || | ||||| || ||||| || || | | Sbjct 20732 TGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAACACGACGACAGCTGCGGACGCG 20791 Query 119425 GTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTG 119483 | || || ||||| ||||| || || |||||||| | || | || | || ||||| Sbjct 20792 GCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGA-ACATCTGTGACATGAGC 20850 Query 119484 TCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 119543 || || || | || | || | ||||||| | ||||||||| | || || ||||| Sbjct 20851 TCATACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGAATACCCAGCGCCACGCGCATG 20910 Query 119544 AACATGTATTGGGG 119557 | ||| | ||||| Sbjct 20911 ATCATCTGCTGGGG 20924 >seq4140 Length=1496 Score = 183 bits (202), Expect = 4e-41 Identities = 363/526 (69%), Gaps = 10/526 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || ||| | ||||| Sbjct 1255 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATC 1196 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA--TTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 | || || |||||||| ||| | | ||| |||| ||| | | | || || | Sbjct 1195 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCAC-CCAGTGAG-TACAGCAGGC 1138 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | ||| |||| ||||||| |||| | | |||||||| ||||| || | Sbjct 1137 GGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 1078 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||| ||| | |||| | | |||||| ||||||| || |||||||| |||| Sbjct 1077 CGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 1018 Query 129966 GAATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGA-GTTCCACGGCAAACTC 130023 | | | | ||| | ||| | | || ||| || | | | | ||| || || || Sbjct 1017 GCACGCGGCTCTCCGGCAGCT-TGTTCACCAACTTCGAGTACATGAGGCAC-GCGAAGTC 960 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 | ||| | |||||||| ||| |||||| || |||||||||| |||||| |||||||| Sbjct 959 CGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAG 900 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 || |||||||| | |||||| || | || || || || |||||||| || |||||||| Sbjct 899 GCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAAAATGCCCTCCAC 840 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCACTTCA 130202 |||||||| | |||||||| | |||| || || | ||| ||||||| | Sbjct 839 GGCGGCGAACGCCAGCAGACGCTCCGGGTAGGA-CGAAACACGAGGGTCACACCACTTGA 781 Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 |||||| | ||||| ||||| | ||||||| |||| ||| || Sbjct 780 GCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 735 >seq118 Length=50062 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 179920 AGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCG 179979 || |||||||| | ||||| || || || | || || || ||||| ||||||||| Sbjct 34725 AGCTGCGCCACGGTCGCATCACGCACGTTCAGAAGTTTGCCGCGAAGAGGAAACACACCG 34784 Query 179980 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 180039 || |||||||| |||||||| | |||||||| || || || | ||| || ||||||||| Sbjct 34785 TACTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCC 34844 Query 180040 TCCGTCACGATGAGCGTACACT 180061 || |||| || |||| |||| Sbjct 34845 TCAGTCAAAATCAGCGAGCACT 34866 >seq4595 Length=1331 Score = 91.5 bits (100), Expect = 2e-13 Identities = 194/287 (68%), Gaps = 2/287 (1%) Strand=Plus/Minus Query 11847 CCACAAAATGAGGAGACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCG 11906 || || || |||||||| || ||||| || || ||| |||||||||| | ||| | Sbjct 1286 CCGCAGAACGAGGAGACCCCGTTCTACCCCCGCTCCCCCTATGGCGTCGCGAAGCTGTAC 1227 Query 11907 GCACATTGGCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTG-CGTGCTCTGGTAT 11965 | | ||| || |||||||||||| || | || | | || | |||| | || || Sbjct 1226 TCGTACTGGATCACGAAGAATTACCGTGAGGCGTACGACATGTTCGCCGTGAAC-GGGAT 1168 Query 11966 TCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGA 12025 || ||||| |||||||| |||||||| || | || ||||| |||||||||| Sbjct 1167 CCTGTTCAATCACGAGTCCCCCCGTCGGGGTGAGACGTTTGTGACCCGGAAGATCACCCG 1108 Query 12026 TGGTATCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGC 12085 || || | ||| |||||| | | | || | | | |||||||||| || | Sbjct 1107 TGCGGTCGCGCGGATCAAGGCGGGCGTGCAGAAGGACCTGTACCTGGGGAACCTGGACTC 1048 Query 12086 CGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGC 12132 | |||||||||| ||||| ||| ||||| || | |||||||| Sbjct 1047 CATCCGGGACTGGGGGTATGCCGCGGAGTATGTCGAGGGCATGTGGC 1001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618389134308040