Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq174 282 5e-71 seq118 158 1e-33 seq4140 154 2e-32 seq4595 140 4e-28 seq258 102 9e-17 seq28 87.8 2e-12 >seq174 Length=41746 Score = 282 bits (312), Expect = 5e-71 Identities = 545/788 (69%), Gaps = 26/788 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 |||||||||| || ||||||| ||| | ||| | || ||| | | | ||||| Sbjct 20911 TCATGCGCGTGGCGCTGGGTATTCACAAGCAAGACATCCAGGCGGCACTGC-ACACGTAT 20853 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | ||| || | || |||||||||||| ||||| || || || ||||| || ||| Sbjct 20852 GAGCTCATGTCACAGATGTTCTTTACGCACGCGACGCCCACGCTCTTTAACGCCGGCACG 20793 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 | || ||| ||||| || |||||| |||| ||| |||| |||||||| || ||| Sbjct 20792 CCGCGTCCGCAGCTGTCGTCGTGTTTCCTGCTGGCCATGCAGGACGACTCGATTGAGGGC 20733 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 || ||||| ||||||||| |||| || ||||||||||||| | || ||||| || || Sbjct 20732 ATTTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCCGGAGGTATTGGCATT 20673 Query 53432 CAC-TGCTCGAACGTCCGTGC---GAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 ||| | ||| |||| || |||| || || ||| || |||||||| | Sbjct 20672 AGTATGCAC-AACATCCGCGCCACGAACAGCT-AC--ATCCGCGGCACGAACGGATCATC 20617 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | | || ||| | || ||||| | |||||||| |||||||||| || || ||||||| Sbjct 20616 CAACGGGATCATCCCCATGCTGAGGGTCTTCAATGACACGGCCCGCTATGTGGACCAGGG 20557 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 || || |||||||| || ||||||||||||||||| |||||||||||||| ||| | | Sbjct 20556 AGGAGGCAAGCGCAAAGGCTCGTTCGCCATCTACCTGGAGCCGTGGCACGCTGACGTGTT 20497 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC---CGTGACCT 53664 ||||| || |||||||| ||| || || | | ||| ||| | || || ||||| Sbjct 20496 CGAGTTCCTGGAGCTGCGCAAGAACCACGG---CAACGAGCTGCACCGCGCGCGCGACCT 20440 Query 53665 GTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGT 53723 || ||| ||||||||| | || || || |||||| | ||||| | ||| ||| Sbjct 20439 CTTCTAC-GCTCTGTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAGCGAACGGCAAGT 20381 Query 53724 GGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTT 53782 || ||| | ||||| || ||| |||||| ||| | | ||| || || || ||||| Sbjct 20380 GGAGCCTTTTCTGCCCCAATGAGGCCCCCGGACTCTACGAGTG-CTGGGGCGACGAGTT- 20323 Query 53783 AACGAGA---TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCG 53839 ||||| |||| || ||||| |||| ||| |||| | |||| || Sbjct 20322 --CGAGACTCTGTACGAGAAGTACGAGAAGGAGGGGCGCGCGCGCAAGACGATCAATGCC 20265 Query 53840 CGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGC 53899 | || | ||| || ||||| | ||| | |||||||| ||||| |||| Sbjct 20264 CAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATTGAGACGGGCGTGCCGTTCATGCTG 20205 Query 53900 TACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGC 53959 |||||||| ||| |||| ||| |||||| ||||| ||||| ||| |||||| Sbjct 20204 TACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACCTCGGCACGATCCGCTCGAGC 20145 Query 53960 AACTTATG 53967 ||||| || Sbjct 20144 AACTTGTG 20137 Score = 208 bits (230), Expect = 8e-49 Identities = 567/849 (67%), Gaps = 53/849 (6%) Strand=Plus/Minus Query 55106 AAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAAT 55165 ||||| |||| ||||| || ||||| |||||| ||||| |||||| ||| || Sbjct 20033 AAGCTGTACGAGGTGACCAAGGTGGTGACCCGGAACTTGAACAAGGTCATTGACGTCAAC 19974 Query 55166 TACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGT 55225 |||||||| || | |||||||||||||||| | || ||||| || | | || || Sbjct 19973 TACTACCCCGTGGAGGAGGCGCGCAAGTCCAACATGCGCCACCGCCCGGTTGGTATTGGC 19914 Query 55226 GTACAGGGCTTGGCCGA--CATCT-TCATGATGCTCGGATTGCCCTTCGA---CTCGGAA 55279 || ||||| | || || ||| | || | ||| | ||| ||||| | || || Sbjct 19913 GTCCAGGGTCTCGCGGATGCATTTATCCTCATGAACTA--TGCG-TTCGAGAGCCCGCAA 19857 Query 55280 CCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGA 55338 || || ||| | ||| | |||||||| || || ||||||| || | | ||| Sbjct 19856 ---GCCCGTGAACTCAACATGAACATCTTCGAGACG-ATCTACTACGCTTCTATGGAGAC 19801 Query 55339 GTCGT--GTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGCT 55396 ||| | ||| | | | |||| ||| | ||||||||||||| | ||||| || Sbjct 19800 CTCGATGGAGATC-GCCAAGGAGCT-GGGCCCGTACGAGACGTTCCAGGGATCGCCTGCC 19743 Query 55397 GACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGTCTGACCCCATGTTTGA-CAAGTT 55455 |||||| | |||||||||| | |||||| ||| ||||| | || | | || Sbjct 19742 AGCAAGGGTATCTTCCAGTTCGACATGTGGGGC--GTC--ACCCCGTCTTCGGGCTTGTG 19687 Query 55456 G---------------AAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGT 55500 | ||| | || | | | ||| | |||||||| || ||||| Sbjct 19686 GGATTGGGCTGCGCTCAAGGAGAACGTGATCAAGCACGGCATCCGCAACTCGCTCCTCGT 19627 Query 55501 GGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCC 55560 ||| || ||||| || ||||||||||||||||| |||||||||||||| | ||||||| Sbjct 19626 GGCTCCGATGCCCACTGCGTCGACGGCTCAGATTTTGGGCAACAACGAGTCCATCGAGCC 19567 Query 55561 GTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATC---AA 55617 ||||||| | ||||| ||| ||||| || || ||||||| ||| |||| || Sbjct 19566 GTACACGTCGAACATGTACAACCGCCGCGTGCTGGCTGGTGAGT---TCACGATCGTGAA 19510 Query 55618 CAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGAT---CAAGAC 55674 |||| ||||| | ||||| ||| || | || |||| || || | ||| | Sbjct 19509 CAAGTACCTCATGAAGGAGCTGATCGAGCTGGGCATCTGGACGCCTGAGGTGCGCAA-CC 19451 Query 55675 GGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGA---GATTCCTCTGCGTCTCAA 55731 ||| || || | |||| || ||||| ||||| || | ||||| | |||| Sbjct 19450 AGATTCTG-GCTG-ACGGTGGCTCCGTGCAGAAGGTGAAATCCATTCCGGACCAGGTCAA 19393 Query 55732 GGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGA 55791 ||||| ||| ||||||||||||||| |||||| || | ||| || || || Sbjct 19392 GGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGGCCGTGTTGGACCTGTCGGCGGA 19333 Query 55792 TCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACT 55851 ||||| || ||||| |||| |||||| |||||||| ||| | | || | | Sbjct 19332 CCGTGGCGCCTACATTTGCCAGAGCCAGTCGCTGAACATTCACATTGCCGACCCGACGAT 19273 Query 55852 GGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTA 55911 |||| ||| || |||||||| |||| ||||||||||| ||||||||||| ||||| Sbjct 19272 TAGCAAGCTGACGTCCATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACGGGCATGTA 19213 Query 55912 CTATCTGCG 55920 ||| |||| Sbjct 19212 CTACATGCG 19204 >seq118 Length=50062 Score = 158 bits (174), Expect = 1e-33 Identities = 312/452 (69%), Gaps = 15/452 (3%) Strand=Plus/Plus Query 117149 AACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAG 117208 ||||| || ||||| ||||| |||||||||| || | |||||| | || ||| |||||| Sbjct 33646 AACCC-GTACCGATCCCCTCCGCACCATTCACGAGCAGCATCGGGATGATAGGCACGTAG 33704 Query 117209 AACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTC 117268 | |||| || || | | ||| ||||| ||||| || | ||||| ||| ||| Sbjct 33705 TGCACAGGTTCAACTGGGAAACCATCGTCGTCTGCGTACCGCAGTAGCGCATCGTC-CTC 33763 Query 117269 GGATCGAATATGTTCTTGGTCCACGGTGCT-----AGGCGAGTGAAAATGTAACGAGAGC 117323 ||| | | | | | | ||||| || | ||||| |||||||||| || Sbjct 33764 C--TCGGGAAAGAGCAAG--CGAGTGTGCTTTTGGAGCAGCGTGAAGATGTAACGAGGGC 33819 Query 117324 TTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGT 117383 | || ||||||||||| || ||||| ||||||||||| || || | ||| || Sbjct 33820 TAGCGGCATCCTTGCCTCCTTGCAGACGGGTACCGAATTGACCTGAAGGATACAACAGCG 33879 Query 117384 TCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCG 117443 |||||||||| ||||| || | || |||| |||||||||||| || || | Sbjct 33880 GAAGGTTGTTGGATCCCACGAAATCCTGCGCCATGTTGACAATCGTCGAGTGCAGTGAAG 33939 Query 117444 CCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCCCGCCAGCTGAGCCACCTTC 117502 | || |||||||| || ||||| ||||| | || ||||||||||||||| |||||||| Sbjct 33940 CTTCGCCATGGTGGTAAGCCGTATGCTCACTGCA-GTAGCCCGCCAGCTGTGCCACCTTA 33998 Query 117503 ATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTC 117562 | || ||| || || || ||||| || ||| |||||| ||||| |||| Sbjct 33999 ACCTCGCTCGTTAGCTTGCGTTTCAGGCATGCGAAAAGCACCTTACGCTGCGAGATCTTC 34058 Query 117563 AGACCATCCGCCACGTGAGGG-ATCGAACGCT 117593 || || || |||| ||||| | ||| |||| Sbjct 34059 AGGCCGTCAACCAC-CGAGGGCAGCGATCGCT 34089 Score = 143 bits (158), Expect = 3e-29 Identities = 196/274 (72%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 152027 GCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 ||||||||||||| || | ||| || ||||||||||| ||| ||| || || || || | Sbjct 33799 GCGTGAAGATGTAACGAGGGCTAGCGGCATCCTTGCCTCCTTGCAGACGGGTACCGAATT 33858 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || || || | | || |||||||||| |||||||||| ||| |||| || | Sbjct 33859 GACCTGAAGGATACAACAGCGGAAGGTTGTTGGATCCCACGAAATCCTGCGCCATGTTGA 33918 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 ||||||| ||||| ||||| || ||||| || ||||| ||||| | ||| | Sbjct 33919 CAATCGTCGAGTGCAGTGAAGCTTCGCCATGGTGGTAAGCCGTATGCTCACTGCAGTAGC 33978 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 |||||| ||| |||||||| | || |||| || || || || || ||| ||| || Sbjct 33979 CCGCCAGCTGTGCCACCTTAACCTCGCTCGTTAGCTTGCGTTTCAGGCATGCGAAAAGCA 34038 Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 |||| ||||| || |||| ||||| ||||| Sbjct 34039 CCTTACGCTGCGAGATCTTCAGGCCGTCAACCAC 34072 >seq4140 Length=1496 Score = 154 bits (170), Expect = 2e-32 Identities = 560/860 (65%), Gaps = 25/860 (3%) Strand=Plus/Minus Query 74456 CTTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTT 74515 ||| || || || || || ||||| || || ||||||||||| || | || |||||| | Sbjct 1262 CTTGGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCAT 1203 Query 74516 CTCCATCCAGTCGAAAGGGTTCTTTGCACCGTAAATA--GGCTTCTCCCCAAACTGTGC- 74572 |||||||||||||| |||||||| | ||| || || | | ||| | || | Sbjct 1202 ATCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGATGCACCC---AGTGAGTA 1146 Query 74573 CATGAGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGAT 74632 || ||||| || ||||| || | |||||||| ||| | | | ||||||||| Sbjct 1145 CAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGCAGAGTTCATGCCGAT 1086 Query 74633 GAGTTTGCACGGC-AGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGA 74691 || | ||||| || | ||| | | ||||| ||| | | | ||| | | Sbjct 1085 CAGCTC-CACGGGGAGCGAGTCGCTCACGAACTCGTGCTCAATCACCACAGCGTCACGCA 1027 Query 74692 CAATCTTGTGAATG----TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAA-GCGT 74746 | ||| ||| | | ||| || || ||| | | || | ||||| | | | Sbjct 1026 CGATCGCGTGCACGCGGCTCTCCGGCAG----CTTGTTCACCAACTTCGAGTACATGAGG 971 Query 74747 CACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAG 74806 |||| | || ||| ||| ||| || || | ||| || | || ||||| || || Sbjct 970 CACG-CGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAG 912 Query 74807 GCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAA 74866 |||||||| || || |||||||| | ||| ||||||| ||||||||||| |||||| Sbjct 911 ACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAACCCGAGAAGAA 852 Query 74867 GATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAG--TC 74924 ||||| || || || || || | || || | || | | | | | | || || Sbjct 851 AATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTAGGACGAAACACGAGGGTC 792 Query 74925 ATCCAAGTCTGAGC-CCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTT 74982 | | | | ||||| || | | ||| | | |||| |||| || ||||| || Sbjct 791 ACACCACT-TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCAC 733 Query 74983 GGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACG 75042 | | | | ||||||| ||| ||||||| | | |||| |||| || |||||| Sbjct 732 GCAGCAAGTGATCCTTCTCCACGGCGTCCTTGATGTACGTGTCGATCAGCAGCGAGTACA 673 Query 75043 TCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCA 75101 |||||| || || |||| || ||| |||| | ||||||| | || ||||| | Sbjct 672 CCTCCGAGTGGATGTTCTCGATGG-CGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGC 614 Query 75102 ATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 | || || || || || ||||| | | ||||| | ||||||||||| ||| Sbjct 613 ACTTGCACCTCATTGCTGAAGTTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCA 554 Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAA 75221 ||||| || || || || ||||| ||||||||||| | ||| || || || |||| Sbjct 553 GCGAAGAATGCTAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTCAGGTTCCCCCAG 494 Query 75222 TCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTT 75281 ||||||||||| | ||| || | ||||||| |||||||||| | | |||||| Sbjct 493 TCCTTCAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTC 434 Query 75282 TTGTACAAAGACCACAAGTC 75301 ||||||| ||||| ||| Sbjct 433 TTGTACATCTGCCACACGTC 414 >seq4595 Length=1331 Score = 140 bits (154), Expect = 4e-28 Identities = 242/347 (70%), Gaps = 15/347 (4%) Strand=Plus/Plus Query 124494 AACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGA--ATCGACT 124551 || || ||||| ||| | | | || ||| ||| ||||| |||||||| |||||| Sbjct 931 AAGTCCCGGATCGTGTACCCCACCCCGGTGGCAAGGACGAAGTCTTCGGGCTCATCGAC- 989 Query 124552 GCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGG 124611 ||||| ||| |||||||| | | ||| || ||| | || | ||||||||| || ||| Sbjct 990 -CTGCAGCATCCGCCACATGCCCTCGACATACTCCGCGGCATACCCCCAGTCCCGGATGG 1048 Query 124612 CATCCAGGTTTCCGAGCTCGATTGGCTT------GGCCGTCTTGTTCCACTCCGCCAAAC 124665 |||||||| || || | | ||| | ||| |||| ||| | | || || Sbjct 1049 AGTCCAGGTTCCCCAGGTACAGGTCCTTCTGCACGCCCGCCTTGATCCGCGCGACCGCAC 1108 Query 124666 CCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACA 124725 | || ||||| || ||||||||| ||| || || |||||||| ||||||| Sbjct 1109 ---GGGTGATCTTCCGGGTCACAAACGTCTCACCCCGACGGGGGGACTCGTGATTGAACA 1165 Query 124726 GAATGCCAGTACACG-CAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATAC 124784 | || || || |||| | ||||| |||||| ||| ||||| || ||||| ||||| ||| Sbjct 1166 GGATCCC-GTTCACGGCGAACATGTCGTACGCCTCACGGTAATTCTTCGTGATCCAGTAC 1224 Query 124785 CCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 | ||||| | |||||||||||| ||||||||||| ||||| Sbjct 1225 GAGTACAGCTTCGCGACGCCATAGGGGGAGCGGGGGTAGAACGGGGT 1271 >seq258 Length=32862 Score = 102 bits (112), Expect = 9e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | |||||| | |||||||| || ||| ||||| || ||||| Sbjct 23128 GTGAAAATATAACGAGCGCTGGCAGAGTCCTTGCCGCCCATCAGACGCGTACCGAACTGA 23187 Query 152089 CC-AGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || | ||| | || |||| || |||||| || ||||||| ||| |||| ||||| Sbjct 23188 CCGATAGGAGAC-AGAAGGTGGATGTTGTTACTTCCAACGAAATCCTGCGCCATGTTCAC 23246 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || ||| |||| |||| || ||||| || ||||| | ||||||| | || || Sbjct 23247 GATACAGCCTTGCAAACTCTGCTCTCCGTGATGGTACGCAGAGTGCTCCGAAACATAGCC 23306 Query 152208 CGCCAACTGCGCCACCTT 152225 ||||||||||||||||| Sbjct 23307 AGCCAACTGCGCCACCTT 23324 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| |||| |||||||| || |||||||||||||| || Sbjct 23128 GTGAAAATATAACGAGCGCTGGCAGAGTCCTTGCCGCCCATCAGACGCGTACCGAACTGA 23187 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | || || |||| | |||||| || || || | || |||| ||| || Sbjct 23188 CCGATAGGAGACAGAAGGTGGATGTTGTTACTTCCAACGAAATCCTGCGCCATGTTCACG 23247 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || ||||| | ||| ||| || || || ||||| | ||||||| || ||||| Sbjct 23248 ATACAGCCTTGCAAACTCTGCTCTCCGTGATGGTACGCAGAGTGCTCCGAAACATAGCCA 23307 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGAC 117511 |||| ||| |||||||| | |||||| Sbjct 23308 GCCAACTGCGCCACCTTAAGCTCTGAC 23334 >seq28 Length=84278 Score = 87.8 bits (96), Expect = 2e-12 Identities = 179/262 (68%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 158927 CACATGCGAAAACAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGT 158986 || |||||| | | |||||| || | || || |||||| || |||| ||||| | Sbjct 42665 CAAATGCGAGCTCCACAAACTCACGAACACTATGACACTCTCCGGTGGCAACAACAAAAT 42606 Query 158987 CCTCTGGACCGGGCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGAC 159046 ||| ||| | ||||| |||||| |||||||| || || || || | ||||| | Sbjct 42605 CCTGTGGCGTGTCGTGTTGAAGCATGCGCCACATGCATTCCACATAGTCACGGGCGTGGC 42546 Query 159047 CCCAGTCGCGCTTGGCATCCATGTTCCCGAGCTCGATG-ACTTTTCCAGACTTTTTCCAC 159105 ||||||| ||||||||||||| ||| || | || | || | || | | | | Sbjct 42545 CCCAGTCACGCTTGGCATCCAGGTTGCCCACAAAGAGGCACCTCTCAATCCCCGCACGAA 42486 Query 159106 TCAGCCAGACCG--AGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGA-- 159161 | || |||| ||||||||||||| ||||| || || |||||| || | || Sbjct 42485 TGCGCACCACCGCACGCGTGATCTTGCGGGTCACGAAGGTTGGTCCGCGTCG--CGGACT 42428 Query 159162 CTCATGGTTAAACAGAATGCCG 159183 ||| ||||| |||||||| ||| Sbjct 42427 CTCGTGGTTGAACAGAATCCCG 42406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547175239248200