Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq1626 1126 0.0 seq4945 260 4e-65 >seq1626 Length=4816 Score = 1126 bits (1248), Expect = 0.0 Identities = 1946/2780 (70%), Gaps = 109/2780 (4%) Strand=Plus/Minus Query 38692 GCGGGTTGCCCCGGTCGAGTCGAACGCACCGGCCTTGATCAAGGACTCGATGGCGCGCTT 38751 ||| || |||||| |||||||||||| || |||||||||| ||||||| || || || Sbjct 3878 GCGTGTCGCCCCGAGCGAGTCGAACGCGCCCGCCTTGATCAGCGACTCGACGGTCCGTTT 3819 Query 38752 GCTCACGGTGGCCTGAGTCGCTGCCTTCAAGAAGTCCGGCAGGGAGGTGAACTTCCCC-- 38809 | | || || | | | | || |||||| | | ||| ||||| | || Sbjct 3818 GTTGGCGACGGGCACGGGAACCTTCGACAGGAAGTCGTGGAAGGACGTGAAGCGCGCCTC 3759 Query 38810 CAGGCTTCCCGCAGTTCGGCGATCTCGGCGACCATGCCCTCGCCCACGTTCTTCACGGCG 38869 | ||| |||| | |||| || |||||| | | || ||||| ||| ||| Sbjct 3758 CTGGCGGGCCGC-----GACGATGGCGTCGACCACGTTAGCCCCGACGTTGCGCACCGCG 3704 Query 38870 GTCAGTCCGAAGCGGATCTCGCTCTCCCCGTTCGGGGTGAAGGAGCTGTTCGAGACCGAC 38929 ||||||||||||||| || || ||| | | |||| ||| | |||| || | Sbjct 3703 CCCAGTCCGAAGCGGATGTCT---TCGCCGACGGCCGCGAAGTAGCGGATCGACTCCCCC 3647 Query 38930 ACGTCGGGCGGCAGGACCCGCAGGCCCATGCGCCGCGCCTCGCCGAGGTACGTGGCCATC 38989 ||||| |||||||| ||| | ||||||||| || |||| |||||| ||||||| Sbjct 3646 ACGTCCGGCGGCAGCACCTTGATGCCCATGCGTCGGCACTCGTTGAGGTAGACGGCCATC 3587 Query 38990 TTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGC 39049 |||| |||| ||||||||| || || | |||||||||||||||||||| || || Sbjct 3586 TTGTCCTTGGAGTCGCCCACGCTCGTCAGGAGCGCCGCCATGTACTCGGCCGGATAATGG 3527 Query 39050 GTCTTCAGGTACGCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGTTG 39109 | ||||||||||||||| | ||||| | || |||||||| || |||||||| |||||| Sbjct 3526 GCCTTCAGGTACGCCGTCCAGTAGGACACCAGTCCGTACGCAGCCGAGTGCGCTTTGTTG 3467 Query 39110 AAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCGCTGTCCGAG 39169 || ||||| | | |||||| | || | |||||||| ||||| ||| || || | Sbjct 3466 AACGCGTAGTCCGAGAAGGGCAGCAGGATGTCCCACAGCGCCTTGATCGCCGACTCGCCG 3407 Query 39170 TAGCCTCGCTCGCGCGCTCCCTTCTG-GAAGTTCACGAACTCCTTGGCCAGAACCTCGGG 39228 ||||| ||||| | |||| | | |||| | || ||| |||| | || ||||| Sbjct 3406 TAGCCCCGCTCCTTCA-TCCCACCCGAGAAGCCCTCGTACTGCTTGTCGAG---CTCGGA 3351 Query 39229 CTTCTTCTTG---CCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGC 39285 ||||||||| ||||| || || || || | ||| |||||||| || | |||| || Sbjct 3350 CTTCTTCTTCTTCCCCATCGCACGGCGGAGAATGTCCGCCTGGCCGAGCGAGAAGCCCGC 3291 Query 39286 GAGGATCTGCGC---CGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGG 39342 | ||||||| |||| | ||||||||||| |||||||| || ||||| | Sbjct 3290 CACCTTCTGCGCGATCGCCATG---ACCTGCTCCTGATAGATGATCAGGCCGTAGCTGAT 3234 Query 39343 GTCCAGGATCTCCCGCAGGGGCTCCTCCACCTCGGGGTGAATCGGCGAGATCGCCTGCTG 39402 ||| ||||| || || |||||||| | ||||||||| ||||||| || | ||||||| Sbjct 3233 GTCGAGGATGTCTTTGAGCGGCTCCTCGAGCTCGGGGTGGATCGGCGTGACCTCCTGCTG 3174 Query 39403 TCCATTCTTCCGGAGGGCATAGTTCGTGTGTGAGCCAACGCCCATCGGACCCGGACGGTA 39462 || ||||| |||||||| ||||| |||| ||| | ||||| || || || ||||| Sbjct 3173 ACCGTTCTTGCGGAGGGCGTAGTTGATGTGGGAGTTCGCCCCCATGGGGCCGGGTCGGTA 3114 Query 39463 CAGCGCGACGACGGCCGAGATGTCCTCGAAGTTGTCGGGCTTCAGCAGGCGGAGCAGGGA 39522 ||||||| ||||||||| | ||||||||||||||||||||| || || || ||||| || Sbjct 3113 GAGCGCGATGACGGCCGACACGTCCTCGAAGTTGTCGGGCTTGAGAAGTCGCAGCAGCGA 3054 Query 39523 GCGCATCGCACCGCCGTCGAGCTGGAACACCGAGAGCGTGTCACCCTTGGCCAGCAGCTC 39582 |||||||| ||| ||||||||||||||||| ||| ||||| || || |||||||| Sbjct 3053 GCGCATCGGACCACCGTCGAGCTGGAACACGCCGAGGGTGTCGCCACGGGTGAGCAGCTC 2994 Query 39583 GTAGGTCGGGGCGTCGTCCAGCGGGATGTTCTCCAGGTCGACGTGCTCCCCACGGTTACG 39642 ||| | || | |||||| |||| || || ||| ||||||| | ||| || ||||| Sbjct 2993 GTACGCCGCTGTGTCGTCGAGCGCGAGGTGCTCGAGGTCGAGCTCCTCGCCCCGGTTCAT 2934 Query 39643 ACGGATGTTCTCGACGGCGTCGCCCATGATCGTGAGGTTCCGCAGGCCGAGGAAGTCCAT 39702 |||||||| |||| ||||| |||||||||||||| ||||| |||||||||||||| Sbjct 2933 CCGGATGTTGTCGAGCGCGTCCGAGATGATCGTGAGGTTGCGCAGCCCGAGGAAGTCCAT 2874 Query 39703 CTTGACCGCGCCCATGCTCTCGCACTGGGGGTAGTCCCACTGCGTGACGGTGACGCCGTC 39762 ||||| | |||| | |||||| || ||||| ||||||||||| | ||||| Sbjct 2873 CTTGATCAGACCCAGGGCTTCGCACGACGGATAGTCGAACTGCGTGACGATCTGTCCGTC 2814 Query 39763 C-GCAGGACGGACCCACACCGGAAGGTGATCGACCAGGGGCTCGTTGGACATGATCACAC 39821 | || | ||| | | ||| | | |||| ||||||||| |||||||| || | Sbjct 2813 CTGCTCG-CGGCGCATGATCGGGATGATGTCGAGCAGGGGCTCCGACGACATGATGACGC 2755 Query 39822 CGGCCGCGTGCACGCCCATCTGGCGAACCAGACCTTCGAGCCCGAGCGCAGTGTCGATCA 39881 | || ||||| |||||| ||| || ||| || ||||||||||| || ||||| | Sbjct 2754 CCGCGGCGTGAACGCCCCACTGACGCTTCAGCCCCTCGAGCCCGAGAGCCCGGTCGAAGA 2695 Query 39882 CCTCCTTCGAGTCCTTGTCGTTCTCGTACAGGCCCCGGATCTCGCCCGCCTCGTCGTAGC 39941 || ||| | || ||| | ||| ||| | |||| ||||| ||||| | | ||| Sbjct 2694 CCGTCTTGGCCTCGGGATCGGTGTCGATGAGGGCGCGGAACTCGCTGGCCTCTTTGAAGC 2635 Query 39942 GCGGGTGCTCCGGGTTGAAGATCCCCTCCAGGGGCATCGACGCGCCCATCACATCGGCCG 40001 |||| |||| | || | | ||||| ||| ||||| | |||||| || | | || Sbjct 2634 GCGGATGCTGGGCGTCGTACATCCCGCTCAGCGGCATGTCCTTGCCCATGACCGCCGGCG 2575 Query 40002 GGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGT 40061 | |||||||||||| ||| || | ||| || | ||||||| ||| | |||| Sbjct 2574 GCATGGCCTTGGTCAGCCGCTCCCCCATGCTGAACGGGAAGCCCAGCACCCGGCCTGCGT 2515 Query 40062 CCTTCATCGCGTTGCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGG 40121 |||||| || | | |||||| |||| | ||| ||||||| |||||| |||| Sbjct 2514 CCTTCAGAGCCTGCTTGGACTTGATGGTGCCGTACGTCACGATCTGCGCGACCCGCTCGG 2455 Query 40122 CCCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAAGTCGA 40181 |||||||||||||||||||| ||| ||||||||||| |||||||| |||||||||| Sbjct 2454 AGCCGTACTTCTCGGTGACGTAGTCGATCACCTCGCCGCGGCGCCGGTCGTCGAAGTCGA 2395 Query 40182 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40241 || | ||||||||| || ||||| |||||||||||||| || |||||||| || |||| Sbjct 2394 CATCGAAGTCGGGCATCGAGACGCGGTCGGGGTTCAGGAAGCGTTCGAAGATCAGGCCGT 2335 Query 40242 GCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCG 40301 |||| || || |||||||||||||| | | | ||||||||||| ||| || || | | Sbjct 2334 GCTCGAGCGGGTCGAGGTCGGTGATGCGCATGGCGTAGGCGACCATCGACCCCGCGCCGG 2275 Query 40302 AGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40361 | || || || ||||| || | | |||||| |||||||||||| |||||||||||||| Sbjct 2274 AACCGCGGCCGGGACCCACGCGGATGCCGTTGTCCTTGGCCCAGTTGATGAAGTCGGCGA 2215 Query 40362 CGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCT 40421 |||||||||||||| ||||| |||||||| | ||| || || ||||||||| | || Sbjct 2214 CGACCAGGAAGTAGCCGGGGAACCCCATCTGCAGGATGATTCCGGTCTCGTACTCGGCCT 2155 Query 40422 GCTTGCCGTGCTCGTAGTC---GGTCCCGTTCGGGAACCG----TCGAGCTGCCCCACGG 40474 |||||| | ||| ||| | | ||||||||| |||| | ||| |||| | Sbjct 2154 GCTTGC---GGACGTTGTCCGGGATGCCGTTCGGGTACCGGTAATGGAG--GCCCTTC-- 2102 Query 40475 TGGACCTCGTCCTCGAACCAGGTCACCTCCGTGTGCCCCTCGGGCACCGGGAAGCGAGGC 40534 | |||||| | | | |||| | |||| || | || |||||||| |||||||| ||| Sbjct 2101 TCGACCTCCTTGACCAGCCAGCTGTCCTCGGTCTCACCGTCGGGCACGGGGAAGCGCGGC 2042 Query 40535 ATGAGGTCGGTGTGC---TCGAACATGCCCGTCGTGTCGACACGCTCGGCGATCTCCAGC 40591 ||| || || | | | |||| | || ||| ||||||||||| ||| Sbjct 2041 ATGTAGTTGGCGCTCGTGTTGAACTCGACC------TCGCATCGCTCGGCGATGAGGAGC 1988 Query 40592 GTGGTCCGCATCCCCCACTCCCAGATGGGAGAGGAGTCGAT-GGCCGCCATCTCGGCGGC 40650 ||| | || | | | || | || | ||| ||| |||| |||||| || Sbjct 1987 GTGTT----GTCGCACGCCTCCGGGTGCTCGCGGA--AGATCTGCCG-CATCTCCTGCGC 1935 Query 40651 CGTCTTGATGTAGTACCCGGAGCCCTCGAACCGGAAGCGGTTCGGGTTGTCGAGCGTGGT 40710 |||||||| |||||||||| ||| |||||| ||||||||| |||| |||||| || | Sbjct 1934 CGTCTTGACGTAGTACCCGTCGCCATCGAACTTGAAGCGGTTGGGGTCGTCGAGGGTCGA 1875 Query 40711 GCCGGTCTGGACGCAGAGTAGGGCATCGTGCGCCTTGCTCTCGT-CGGCCGTGACGTAGT 40769 || | ||| ||||| || || || ||||||| | | ||||| | | | | ||||| Sbjct 1874 TCCCGACTGCACGCACAGCAGCGCCGCGTGCGCGTCGGCCTCGTGCTGGTG-GGTGTAGT 1816 Query 40770 GGCTGTCGTTGGTGACCACCGGGGTGAGCGCGAGGTGCTTGCCCAGCCGG--TAGA--GG 40825 || ||||||||| ||||| | | || |||| | ||| | ||| ||| || Sbjct 1815 GGGAGTCGTTGGTCGCCACCAGCGGGATGCCGAGATCCTTCGAGATGCGGATCAGATCGG 1756 Query 40826 TCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGTACCGG 40885 || || || ||||||||||| || ||||| ||||||||||| |||||| Sbjct 1755 TCATC----ACCCGCCGCTCGATGGAGAGCCCGTGATCCATGATCTCGGCGAAGTAGTTC 1700 Query 40886 TCACGACCGAACACCTCCAGGTAC----CGGCCAGCCTCCGCAACGGCCTGGTCGTACTG 40941 || | ||||| | ||| || || ||||| ||| || |||| ||||||||| Sbjct 1699 TCCCTGCCGAAGATGTCCTGGAACTCCGCGGCC-GCCGCCCGCGCGGC---GTCGTACTG 1644 Query 40942 CCCGAGGTTGAGCCGGGTCATGA--TCGCACCGCCAGGGCAGCCCGTGGTGACGATCAGG 40999 ||||| || || ||| | |||| ||| | ||||| ||||| || ||||||| Sbjct 1643 GCCGAGACGCAGTCGCGTCTGCACCTCGC-CCGAC-GGGCACCCCGTCGTCGCGATCAGT 1586 Query 41000 CCCTCGTTGT-GCTCGGCGACGAGGTCGAAGTCCATGCGCGGGTACTTCCCG-AGCAGGC 41057 |||| | || | || ||| || || |||||| ||||| ||| | || | | Sbjct 1585 CCCTTGCCGTAGGTC-TCGAGCAGTTCCCGGTCCATACGCGG---CTTGAAGTAGTA-CC 1531 Query 41058 CCTCTTGGTACGACCGAGAGCTGAGCTTCATGAGGTTGTGCAGGC---CGGT-CTTGTTC 41113 |||| | |||| ||||||||| | ||| ||||||| || |||| ||| | Sbjct 1530 CCTCCATGCTCGACAACGAGCTGAGCCGGAAGAGATTGTGCATGCCCTCGGTGCTTTGAC 1471 Query 41114 TCGGCGAGGATCGTGAGGTGGGTGTACGCACCGCGACCGCTCACGTCGTAACGCT--TCT 41171 || | ||||| | |||||||||||| ||| ||| || |||| |||| || Sbjct 1470 TCCAC----ATCGTCATGTGGGTGTACGCGCCGGAGCCGGAGACATCGT--CGCTGCGCT 1417 Query 41172 GGTCCTCGGTGCCCCACTGCACCCGCTCCTGATCGAAGC---GCGAGCCCGGAGCCATGT 41228 | || ||||||||||||||| || | ||| || ||| ||| || | | || Sbjct 1416 GCTCGGGGGTGCCCCACTGCACGCGGGATTTGTCGCTGCGGTGCGTGCCGGGGGTGACGT 1357 Query 41229 ACGCCTCGATGCCGATGATCGGCTTGACCCCAGCGGCCGTAGCTGTGGTGAAGAAGTCGT 41288 | ||||||| |||||||||||||||| || || ||| | || | | || |||| ||| Sbjct 1356 AGGCCTCGAGACCGATGATCGGCTTGATGCCCGCCGCCTTGGCGGCGTTGTAGAACTCGA 1297 Query 41289 GCGCACCGTGCAG--GTTGCCGTGGTCGGTGACGGCGACTGCCGGGGAGCCCT-GGCGGG 41345 || ||| | || ||||||||||||||||||||||| ||||| ||| | ||| Sbjct 1296 ACG--CCGCGAAGGTGTTGCCGTGGTCGGTGACGGCGATGGCCGGCATGCCGTAATCGGC 1239 Query 41346 CGACCTCGGCGACCATCTGCTTC-ATCCGAGCGGCCCCGTCGAGGAGGCTGTACTCGGAG 41404 || | | ||| ||| || | ||| || ||||||||||| | ||||||| | Sbjct 1238 CGCCGCCTGCG-TCAT-GGCGCCGATCTTGGCCGCCCCGTCGAGCATCGAGTACTCGCTG 1181 Query 41405 TGGTTGTGGAGGTGAACGAA 41424 || ||| ||||||||||| Sbjct 1180 TGCACGTGCAGGTGAACGAA 1161 >seq4945 Length=1226 Score = 260 bits (288), Expect = 4e-65 Identities = 479/692 (69%), Gaps = 30/692 (4%) Strand=Plus/Minus Query 36812 GGTGAGGGGCATGTCCTGGTGGAAGAAGTCCTCCATCTTCTCGGCGACCATCTCGATCTC 36871 ||||||||||||| || | ||||| ||||||||||||||||| |||||||||||| Sbjct 1162 GGTGAGGGGCATGAGCTCGGCCCAGAAGGCCTCCATCTTCTCGGCGCACATCTCGATCTC 1103 Query 36872 CCGCTGAGGGAAGGAGGGGAAGGTCGACTCCGAGTCGGTC---GTTCGCAGCGAGAGGAA 36928 ||||| ||||||||||||||| | |||| |||| | || ||||| || ||||| Sbjct 1102 GCGCTGCGGGAAGGAGGGGAAGT--GGCTCCCC-TCGGCCTTGGTGCGCAGAGACAGGAA 1046 Query 36929 GTGCATCAGGCTGCGCGCGTTGCAGGTGGCGTAGAACGAGGTGAAGATGCCCACCGGCAG 36988 || |||||| ||||| || |||| |||| | ||||| | ||||| || |||||| Sbjct 1045 GTTCATCAGCGACCGCGCATTCATGGTGACGTACATCGAGGAGTAGATGTTCAGCGGCAG 986 Query 36989 GATGCTGCGGGCCACCTCCTTGGCGATGCCGTGCAGGAGCAGGGCTTCGTACTCGCCGTA 37048 | | | ||||||||||| |||| ||| | |||| | ||| || | Sbjct 985 CACGATACGGGCCACCTCTCGCGCGACGCCCGCCGCCAGCATCCGCTGGTAGGTCTCGAA 926 Query 37049 CAGGTCGGCGTACACGCCCTCGAAAACGTACGG-GACGAGGTCCTTCTGGAAGCTGGTGC 37107 ||||| | |||| ||| | | || ||||| | | ||| | |||| Sbjct 925 TGCGTCGGTGGCGACGCG-TCGCACCCCCTCGTCGACGACCGCGTGCTGCTCGGGCGTGC 867 Query 37108 CCGGCTCGAAGGTGTAGGCACCGGGCTTGCCGACCTGGACCAGGTTGCGGTCAGG-GCCG 37166 | || ||| |||||| |||||||| |||||||| |||||||||||||| | |||| Sbjct 866 CGGGGAGGAACTCGTAGGCTCCGGGCTTTCCGACCTGCACCAGGTTGCGGTCCGCCGCCG 807 Query 37167 GGCACGTAGAACGTGGGCTGGAGCTGCTTGTACCGGCCGCTCTCCTCGTTGTAGCTCCAG 37226 || |||||||| ||| | |||| | ||||| |||| |||||||||||| | || Sbjct 806 GG-ACGTAGAAGACCGGCCGCAGCTCCCGGTACCTGCCGGACTCCTCGTTGTA---CGAG 751 Query 37227 CCAGCGCGGTGGCGGAAGAACTCGCGGGCCACGAAGACCGGGGCCTCGATGTAGAAGGTG 37286 | |||||| || | ||| |||||| ||||||| ||| |||| | |||||| || Sbjct 750 GCGATGCGGTGCCGCATGAATTCGCGGAAGACGAAGATCGGCGCCTGAACGTAGAACGTC 691 Query 37287 AAGCTGTTGTGCTCGAACGGCGAGCCGTGCCTGTCCCGCATGAGGAAGTTGATCAGGCCC 37346 | |||||||||||| ||||| ||||| | || ||||||||| |||||||||||||| Sbjct 690 ATCGAGTTGTGCTCGAAGGGCGACCCGTGTCGATCGCGCATGAGGTAGTTGATCAGGCCC 631 Query 37347 TCGTC-CTTGGCGAGGTCGACGGTCTTGTCGTGCGATCCGCCGATGG--TGCT------- 37396 | ||| || | || || | | || | || | | || ||| || |||| Sbjct 630 TTGTCTCTCGCCGTGGCCTCGGTTCCGGCCGCG-GCGGCGTCGAGGGTCTGCTCGCCCTG 572 Query 37397 ------GACCCGCGCGGCCATGGCCACGTCGGAGTCCCTGGCGCTGGACTTGACCAGCGA 37450 || |||||||| | | ||| |||| ||| ||||||||| ||| ||| Sbjct 571 CGTCGACACGCGCGCGGCGAAGAGCACATCGGCGTCGGAGGCGCTGGATCGGACGAGCTC 512 Query 37451 CACTGTCACATCGCTGCGGAACTGGATCTCGG 37482 || |||||||||||||||||| |||||||| Sbjct 511 TACGGTCACATCGCTGCGGAACGCGATCTCGG 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160395049141866