Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq1626 1178 0.0 seq4945 221 4e-53 >seq1626 Length=4816 Score = 1178 bits (1306), Expect = 0.0 Identities = 1947/2775 (70%), Gaps = 97/2775 (3%) Strand=Plus/Minus Query 37599 GCGGGTGGCACCCGTG-GAGTCGAACGCACCGGCCTTGATCAAGGACTCGACGGCTCGCT 37657 ||| || || |||| | ||||||||||| || |||||||||| |||||||||| || | Sbjct 3878 GCGTGTCGC-CCCGAGCGAGTCGAACGCGCCCGCCTTGATCAGCGACTCGACGGTCCGTT 3820 Query 37658 TGCTC---ACGTTCGCCTGAGTCGCCGACCGAAGGAAGTCCGGCAGGGAGGTGAACTTCC 37714 || | ||| | | || | |||| |||||||| | | ||| ||||| | Sbjct 3819 TGTTGGCGACGGGCACGGGAACCTTCGAC---AGGAAGTCGTGGAAGGACGTGAAGCGCG 3763 Query 37715 CC--CAGGCTTCCCGCAGTTGGACGATCTCATCGACCATGCCCTCGCCCACGTTCTTCAC 37772 || | ||| |||| |||||| | ||||||| | | || ||||| ||| Sbjct 3762 CCTCCTGGCGGGCCGC-----GACGATGGCGTCGACCACGTTAGCCCCGACGTTGCGCAC 3708 Query 37773 GGCGGTCAGCCCGAAGCGGATCTCCCGCTCCCCGTTCGGGGTGAAGGAGGAGTTCGAGAC 37832 ||| ||| ||||||||||| || || ||| | | |||| || | |||| | Sbjct 3707 CGCGCCCAGTCCGAAGCGGATGTCT---TCGCCGACGGCCGCGAAGTAGCGGATCGACTC 3651 Query 37833 CGACACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGC 37892 | |||||| |||||||| ||| | ||||||||| | ||||||| |||||| ||| Sbjct 3650 CCCCACGTCCGGCGGCAGCACCTTGATGCCCATGCGTCGGCACTCGTTGAGGTAGACGGC 3591 Query 37893 CATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTA 37952 |||||||| |||| ||||||||| || || | |||||||||||||||||||| || Sbjct 3590 CATCTTGTCCTTGGAGTCGCCCACGCTCGTCAGGAGCGCCGCCATGTACTCGGCCGGATA 3531 Query 37953 GTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTT 38012 || | ||||||||||||||| | ||||| | ||||||||||| || |||||||| || Sbjct 3530 ATGGGCCTTCAGGTACGCCGTCCAGTAGGACACCAGTCCGTACGCAGCCGAGTGCGCTTT 3471 Query 38013 GTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCCTC 38072 |||||| ||||| | | |||||| | || | |||||||| |||| ||| || | ||| Sbjct 3470 GTTGAACGCGTAGTCCGAGAAGGGCAGCAGGATGTCCCACAGCGCCTTGATCGCCGACTC 3411 Query 38073 CGAGTAGCCTCGCTCGCTCGCCCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTC 38132 |||||| ||||| || ||| | |||| | || ||| |||| | ||| || Sbjct 3410 GCCGTAGCCCCGCTCCTTCATCCCACCCGAGAAGCCCTCGTACTGCTTGTCGAGC---TC 3354 Query 38133 GGGCTTCTTCTTG---CCCATGGCGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCC 38189 || ||||||||| ||||| || || ||||| | ||| ||||| ||||| | | | || Sbjct 3353 GGACTTCTTCTTCTTCCCCATCGCACGGCGGAGAATGTCCGCCTGGCCGAGCGAGAAGCC 3294 Query 38190 GGCCAGGATCTGCGC---CGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGT 38246 |||| ||||||| |||| | ||||||||||| |||||||| || ||| || | Sbjct 3293 CGCCACCTTCTGCGCGATCGCCATG---ACCTGCTCCTGATAGATGATCAGGCCGTAGCT 3237 Query 38247 CGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCTCCTG 38306 ||| ||||| || ||||||||||| | |||||||||||||||||||| |||||| Sbjct 3236 GATGTCGAGGATGTCTTTGAGCGGCTCCTCGAGCTCGGGGTGGATCGGCGTGACCTCCTG 3177 Query 38307 CTGACCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGACCCGGACG 38366 ||||||||||||||||||||||||||| |||| ||| | ||||| || || || || Sbjct 3176 CTGACCGTTCTTGCGGAGGGCGTAGTTGATGTGGGAGTTCGCCCCCATGGGGCCGGGTCG 3117 Query 38367 GTACAGCGCGACGACGGCCGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGCGAAGCAG 38426 ||| ||||||| ||||||||| | ||||||||| | ||| ||||| || || || ||||| Sbjct 3116 GTAGAGCGCGATGACGGCCGACACGTCCTCGAAGTTGTCGGGCTTGAGAAGTCGCAGCAG 3057 Query 38427 GGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGGGTGTCGCCCCTGGCCAGCAG 38486 |||||||||| || |||||||||||||| || |||||||||||| | || ||||| Sbjct 3056 CGAGCGCATCGGACCACCGTCGAGCTGGAACACGCCGAGGGTGTCGCCACGGGTGAGCAG 2997 Query 38487 CTCGTAGGTTGCCGGGTCGTCCAGCGGGATGTTCTCGATGTCGACGTGCTCACCACGGTT 38546 |||||| | || | |||||| |||| || || ||||| ||||| | ||| || ||||| Sbjct 2996 CTCGTACGCCGCTGTGTCGTCGAGCGCGAGGTGCTCGAGGTCGAGCTCCTCGCCCCGGTT 2937 Query 38547 GCGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTC 38606 |||||||| |||| |||||| |||||||||||||| || |||||||||||||| Sbjct 2936 CATCCGGATGTTGTCGAGCGCGTCCGAGATGATCGTGAGGTTGCGCAGCCCGAGGAAGTC 2877 Query 38607 CATCTTCAGCAGGCCCAGGGCCTCGCAGCTCGGGTAGTCGAACTGCGTGATCGTCACGCC 38666 |||||| | ||| |||||||| ||||| ||| |||||||||||||||| || || Sbjct 2876 CATCTTGATCAGACCCAGGGCTTCGCACGACGGATAGTCGAACTGCGTGACGATCTGTCC 2817 Query 38667 GTCC-GCAGGCCGCACCCACG-TAGGGATGTGGTCGACCAGCGGCTCGTCAGACATGATC 38724 |||| || || | | || | | |||||| ||||| ||| ||||| |||||||| Sbjct 2816 GTCCTGCTCGCGG--CGCATGATCGGGATGATGTCGAGCAGGGGCTCCGACGACATGATG 2759 Query 38725 ACACCGGCTGCGTGCACGCCCATCTGCCGGACGAGTCCTTCGAGGCCACGCGCGAGGTCG 38784 || || || ||||| |||||| ||| || || || ||||| || | || ||||| Sbjct 2758 ACGCCCGCGGCGTGAACGCCCCACTGACGCTTCAGCCCCTCGAGCCCGAGAGCCCGGTCG 2699 Query 38785 ATGACCTCCTTCGCGTCCTTGTCGTTCTCGTACAGCGCCCGGATCTCGCCCGCCTCGTCG 38844 | |||| ||| || || ||| | ||| || || |||| ||||| ||||| | | Sbjct 2698 AAGACCGTCTTGGCCTCGGGATCGGTGTCGATGAGGGCGCGGAACTCGCTGGCCTCTTTG 2639 Query 38845 TAGCGCGGGTGCTCCGGGTTGGTGATGCCCTCCAGGGGCATCGACGCGCCCATCACGTCG 38904 ||||||| |||| | || | || || ||| ||||| | |||||| || | Sbjct 2638 AAGCGCGGATGCTGGGCGTCGTACATCCCGCTCAGCGGCATGTCCTTGCCCATGACCGCC 2579 Query 38905 GCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCC 38964 | ||| |||||||||||| ||| || | ||| || | ||||||| ||| | Sbjct 2578 GGCGGCATGGCCTTGGTCAGCCGCTCCCCCATGCTGAACGGGAAGCCCAGCACCCGGCCT 2519 Query 38965 GCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGTGCGACCTTG 39024 |||||||||| || | | |||||| ||||||||| ||||||| |||||| Sbjct 2518 GCGTCCTTCAGAGCCTGCTTGGACTTGATGGTGCCGTACGTCACGATCTGCGCGACCCGC 2459 Query 39025 TCACTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAG 39084 || ||||||||||||||||||||| |||||| ||||| ||||| ||||| |||||| Sbjct 2458 TCGGAGCCGTACTTCTCGGTGACGTAGTCGATCACCTCGCCGCGGCGCCGGTCGTCGAAG 2399 Query 39085 TCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGC 39144 |||| || | ||||||||| ||||| || || ||||||||||| || |||||||| || Sbjct 2398 TCGACATCGAAGTCGGGCATCGAGACGCGGTCGGGGTTCAGGAAGCGTTCGAAGATCAGG 2339 Query 39145 CCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCC 39204 ||||| || ||||| ||||||||||| | | |||||| ||| ||| ||| || || Sbjct 2338 CCGTGCTCGAGCGGGTCGAGGTCGGTGATGCGCATGGCGTAGGCGACCATCGACCCCGCG 2279 Query 39205 GCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCG 39264 | || ||||| || || || || | | |||||| ||||| |||||| |||||||||| Sbjct 2278 CCGGAACCGCGGCCGGGACCCACGCGGATGCCGTTGTCCTTGGCCCAGTTGATGAAGTCG 2219 Query 39265 GCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTACTCG 39324 |||||||| |||||||| |||||||||||||| ||| || || ||||||||||| Sbjct 2218 GCGACGACCAGGAAGTAGCCGGGGAACCCCATCTGCAGGATGATTCCGGTCTCGTACTCG 2159 Query 39325 ACCTGCGTGCGGTGCTCGTCGTCGTACCCACCGGGGAAGCGGCGGTCCATGCCGATGAGC 39384 ||||| ||||| | ||| | || ||| | ||| | | ||| | Sbjct 2158 GCCTGCTTGCGGACGTTGTCCGGGATGCCGTTCGGGTACCGGTAATGGAGGCCCTTCTCG 2099 Query 39385 ACCTGCTCGCGGAAGAACTGGCCCTCCGTCTGGCCCTCGGGCACCGGGAAGCGGGGCATG 39444 |||| || | | | | |||| |||| || |||||||| |||||||| |||||| Sbjct 2098 ACCTCCTTGACCAGCCAGCTGTCCTCGGTCTCACCGTCGGGCACGGGGAAGCGCGGCATG 2039 Query 39445 AGGTTCTGGAACTCGAACATGCCGGTCGTGTCGACC------CGGTCGGCGATCTCCAGC 39498 || ||| |||| || | | |||||| || |||||||| ||| Sbjct 2038 TAGT--TGGCGCTCG----TGTTGAAC---TCGACCTCGCATCGCTCGGCGATGAGGAGC 1988 Query 39499 GTGGTCCGCATCCCCCACTCCCAGATGGGAGAGGAGTCGATGGCTGC--CATCTCGGCGG 39556 ||| | || | | | || | || | ||| ||| |||| |||||| | Sbjct 1987 GTGTT----GTCGCACGCCTCCGGGTGCTCGCGGA--AGAT--CTGCCGCATCTCCTGCG 1936 Query 39557 CCGACTTCAGGTAGTACCCCTCGCCCTCGAACCGGAACCGATCCTCCTGGTAGAGGGTCG 39616 ||| ||| | ||||||||| ||||| |||||| ||| || | | || |||||||| Sbjct 1935 CCGTCTTGACGTAGTACCCGTCGCCATCGAACTTGAAGCGGTTGGGGTCGTCGAGGGTCG 1876 Query 39617 AGCCGGTCTGGACGCACAGCAGGGCGTCGTGGGCCGCAGCCTCCTCGACCCGCGTGTAGT 39676 | || | ||| ||||||||||| || |||| || | ||||| | | ||||||| Sbjct 1875 ATCCCGACTGCACGCACAGCAGCGCCGCGTGCGCGTCGGCCTCGTGCTGGTGGGTGTAGT 1816 Query 39677 GCGAGTCGTTGGTGACCACCGGGGTGAGACCGAGGCGCTGACCGAGGCGG--TAGA--GG 39732 | ||||||||||| ||||| | | || ||||| || || |||| ||| || Sbjct 1815 GGGAGTCGTTGGTCGCCACCAGCGGGATGCCGAGATCCTTCGAGATGCGGATCAGATCGG 1756 Query 39733 TCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGAAGTTG 39792 || || || ||||||||||| || ||||| ||||||||||| |||| |||| Sbjct 1755 TCATC----ACCCGCCGCTCGATGGAGAGCCCGTGATCCATGATCTCGGCGAAGTAGTTC 1700 Query 39793 TCCTTCCCGAAGATCTCCCGCCACTTCGCGGCCTCGGCGACGGCCTCCTCGTACTGGCCG 39852 ||| | |||||||| ||| | ||| ||||||| | || || | |||||||||||| Sbjct 1699 TCCCTGCCGAAGATGTCCTGGAACTCCGCGGCCGCCGCCCGCGCGGCGTCGTACTGGCCG 1640 Query 39853 AGGTTGAGCCGGGTCATCACTGCGCCACCGGGGCATCCCGTGGTGCCGATCAGGCCCTCT 39912 || || || ||| ||| |||| ||||| ||||| || ||||||| |||| Sbjct 1639 AGACGCAGTCGCGTCTGCACCTCGCCCGACGGGCACCCCGTCGTCGCGATCAGTCCCTTG 1580 Query 39913 GCGTGCTCCGCCACCAGCTCGGCGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCGCT 39971 ||| | | | ||| || |||||| ||||| ||| | || | ||||| | Sbjct 1579 CCGTAGGTCTCGAGCAGTTCCCGGTCCATACGCGG---CTTGAAGTAGTA-CCCCTCCAT 1524 Query 39972 GTACGAGCGAGAGGAGAGCTTGAACAGGTTGTGCAGGCCGGTCTTG-TTCGTGGCGAGCA 40030 | ||| ||| |||| ||| || ||||||| ||| || || | | | || Sbjct 1523 GCTCGACAACGAGCTGAGCCGGAAGAGATTGTGCATGCCCTCGGTGCTTTGACTCCA-CA 1465 Query 40031 TGGTCATGTGGGTGTAGGCACCCCGACCGCTCACGTCGTACCGCT--TCTGCTCGGGCGT 40088 | |||||||||||||| || || ||| || |||| |||| ||||||||| || Sbjct 1464 TCGTCATGTGGGTGTACGCGCCGGAGCCGGAGACATCGT--CGCTGCGCTGCTCGGGGGT 1407 Query 40089 GCCCCACTGGACCCGCTCCTGGTCGGAACGGTGC---CCCGGTGCGACGTACGCCTCGAT 40145 ||||||||| || || | |||| |||||| || || | |||||| ||||||| Sbjct 1406 GCCCCACTGCACGCGGGATTTGTCGCTGCGGTGCGTGCCGGGGGTGACGTAGGCCTCGAG 1347 Query 40146 CCCGATGATGGGCTTGACCCCAGCGGCCTGCCCCTGCG-TGAAGAAGTCGTACGCACCAT 40204 |||||||| ||||||| || || |||| | ||| || |||| ||| ||| || Sbjct 1346 ACCGATGATCGGCTTGATGCCCGCCGCCT-TGGCGGCGTTGTAGAACTCGAACG--CCGC 1290 Query 40205 GCAG--GTTGCCGTGGTCGGTCATCGCGAGGGCTCTCATGCCCTGCGCCTTGGCCTCGGC 40262 | || ||||||||||||||| | |||| ||| |||||| | | |||| | || Sbjct 1289 GAAGGTGTTGCCGTGGTCGGTGACGGCGATGGCCGGCATGCCGT---AATCGGCCGCCGC 1233 Query 40263 GAACATGTCCTTCAGCCGA-----GCCGCCCCGTCGAGCAGGCTGTACTCGGAGTGGACA 40317 | ||| | ||||| |||||||||||||||| ||||||| ||| || Sbjct 1232 CTGC--GTCATGGCGCCGATCTTGGCCGCCCCGTCGAGCATCGAGTACTCGCTGTGCACG 1175 Query 40318 TGCAGGTGAACGAAG 40332 ||||||||||||||| Sbjct 1174 TGCAGGTGAACGAAG 1160 >seq4945 Length=1226 Score = 221 bits (244), Expect = 4e-53 Identities = 364/519 (70%), Gaps = 7/519 (1%) Strand=Plus/Minus Query 35716 AGTAGTCCTCCATGCGCTCCGCGACCTGCTCGATCTCCCGCTGCGGGAACGAGGGGTACG 35775 || || ||||||| ||| ||| | ||||||||| ||||||||||| |||||| | | Sbjct 1139 AGAAGGCCTCCATCTTCTCGGCGCACATCTCGATCTCGCGCTGCGGGAAGGAGGGGAA-G 1081 Query 35776 TCGA-CTCGTCGTCGGTGGTGCGCAGCGAGAGGAAGTGCATGAGCGACCGCGCGTTGCAG 35834 | | | | ||| | |||||||||| || ||||||| ||| ||||||||||| || | Sbjct 1080 TGGCTCCCCTCGGCCTTGGTGCGCAGAGACAGGAAGTTCATCAGCGACCGCGCATTCATG 1021 Query 35835 GTCGCGTAGAACGAGGTGAAGATCCCGACCGGAAGGATGGACCGGGCCACCTCGCGGGCG 35894 || |||| | ||||| | |||| | ||| || | | ||||||||||| || ||| Sbjct 1020 GTGACGTACATCGAGGAGTAGATGTTCAGCGGCAGCACGATACGGGCCACCTCTCGCGCG 961 Query 35895 ATGCCTGCGTCGAGCAGGCTCTGGTACTCGCCGTAGATCTCGGAGTACACGCCCTCGAAG 35954 | ||| || | |||| | |||||| || | |||| | |||| ||| | Sbjct 960 ACGCCCGCCGCCAGCATCCGCTGGTAGGTCTCGAATGCGTCGGTGGCGACGCG-TCGCAC 902 Query 35955 ACG-TAGGGGACGAGGCCCTTCTGGTAGGTCGAGCCGTCCTCGAAGGTGTAGGCACCGGC 36013 | | | ||||| | | ||| | || || |||| ||| |||||| |||| Sbjct 901 CCCCTCGTCGACGACCGCGTGCTGCTCGGGCGTGCCGGGGAGGAACTCGTAGGCTCCGGG 842 Query 36014 CTTGCCGACCTGCACCAGGGGGCGGTCCGCAGCGGGCACGTAGAAGACGGGCTCCAGGTT 36073 ||| ||||||||||||||| ||||||||| || || ||||||||||| ||| ||| | Sbjct 841 CTTTCCGACCTGCACCAGGTTGCGGTCCGCCGCCGGGACGTAGAAGACCGGCCGCAGCTC 782 Query 36074 CTTGTAGCGCCCGCTCTCCTCGTTGTAGCTCCAGCCAGCGCGGTGACGGAAGAACTCCCG 36133 | ||| | ||| |||||||||||| | || | |||||| || | ||| || || Sbjct 781 CCGGTACCTGCCGGACTCCTCGTTGTA---CGAGGCGATGCGGTGCCGCATGAATTCGCG 725 Query 36134 CGCCACGAAGATCGGGGCCTCGATGTAGAAGGTGAAGCTGTTGTGCTCGAAGGGGCTGCC 36193 ||||||||||| |||| | |||||| || | ||||||||||||||| || Sbjct 724 GAAGACGAAGATCGGCGCCTGAACGTAGAACGTCATCGAGTTGTGCTCGAAGGGCGACCC 665 Query 36194 GTGCCGGTCCCGCATGAGGAAGTTGATCAGCCCCTCGTC 36232 ||| || || ||||||||| |||||||||| |||| ||| Sbjct 664 GTGTCGATCGCGCATGAGGTAGTTGATCAGGCCCTTGTC 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159703898053338