Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_028904.1 Length=49452 Score E Sequences producing significant alignments: (Bits) Value seq4945 230 7e-56 >seq4945 Length=1226 Score = 230 bits (254), Expect = 7e-56 Identities = 366/517 (71%), Gaps = 15/517 (3%) Strand=Plus/Minus Query 39236 CCTCCATCTCGTCGGCCACCATCTCGATCTCCCGGAGAGGGAAGCTCGGAACCT---TCG 39292 ||||||||| ||||| |||||||||||| || | |||||| || | | || Sbjct 1133 CCTCCATCTTCTCGGCGCACATCTCGATCTCGCGCTGCGGGAAGGAGGGGAAGTGGCTCC 1074 Query 39293 CGTTCTCGCGCTGGGTCCGGAGGCTGAGGAAGCTCATCAGGGAGCGTGCGTTGCACGTCG 39352 | |||| || ||| || || |||||| ||||||| || || || || || Sbjct 1073 C---CTCGGCCTTGGTGCGCAGAGACAGGAAGTTCATCAGCGACCGCGCATTCATGGTGA 1017 Query 39353 CGTAGAAGGAGGTGTAGATGCCGACCGGCAGGACGTTGCGCGCTACCTCGCGGGCGACGC 39412 |||| | |||| ||||||| | |||||| ||| | || || ||||| || ||||||| Sbjct 1016 CGTACATCGAGGAGTAGATGTTCAGCGGCAGCACGATACGGGCCACCTCTCGCGCGACGC 957 Query 39413 CCGCACCGAGCTGGTTCTGGTACGCCTGCCAGGCGGCGCGGTAGGCGTC-CTTCGAGGAG 39471 |||| | ||| |||||| | || | ||| || || |||| | | ||| Sbjct 956 CCGCCGCCAGCATCCGCTGGTAGGTCTCGAATGCGTCG--GT-GGCGACGCGTCGCACCC 900 Query 39472 GC-CGT-GACGCTCATGTACTGGCCGAGGGTGCCCGGCTCGAAGCGGTAGGCACCGGGCT 39529 | ||| |||| | || ||| || | ||||| || ||| |||||| ||||||| Sbjct 899 CCTCGTCGACGACCGCGTGCTGCTCGGGCGTGCCGGGGAGGAACTCGTAGGCTCCGGGCT 840 Query 39530 TGCCGACCTGGACGAGGTTGCGGTCCGAGGCAGGCACGTAGAAGACCGGGTCGAGCTCCT 39589 | |||||||| || ||||||||||||| || || |||||||||||||| |||||| Sbjct 839 TTCCGACCTGCACCAGGTTGCGGTCCGCCGCCGGGACGTAGAAGACCGGCCGCAGCTCCC 780 Query 39590 TGTACCGGCCCGACTCCTCGTTGTAGCTGAAGCCGATGCGGTGGCGGAAGAACTCGCGGG 39649 ||||| ||| |||||||||||||| || |||||||||| || | ||| |||||| Sbjct 779 GGTACCTGCCGGACTCCTCGTTGTA---CGAGGCGATGCGGTGCCGCATGAATTCGCGGA 723 Query 39650 CCACGAAGATCGGGGCCTCGATGTAGAAGACGAAGTGGTTGTGCTCGAACGGGGAGCCGT 39709 ||||||||||| |||| | |||||| | |||||||||||| || || |||| Sbjct 722 AGACGAAGATCGGCGCCTGAACGTAGAACGTCATCGAGTTGTGCTCGAAGGGCGACCCGT 663 Query 39710 GCCTGTCGCGCATGAGGTAGTTGATGAGCCCCTTGTC 39746 | | |||||||||||||||||||| || |||||||| Sbjct 662 GTCGATCGCGCATGAGGTAGTTGATCAGGCCCTTGTC 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158113610595012