Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq4983 435 1e-117 seq780 125 3e-24 >seq4983 Length=1217 Score = 435 bits (482), Expect = 1e-117 Identities = 585/809 (72%), Gaps = 15/809 (2%) Strand=Plus/Minus Query 66456 CCGTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGT 66515 |||| || ||||| |||||||||| ||||| |||||| |||||| ||| |||| ||| Sbjct 865 CCGTCGAGGTCATCTCCACCGGCTCCATCGCGTTGGACGTCGCCCTCGGCGTCGGCGGGC 806 Query 66516 ACCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGT 66575 || | |||||| | | || |||||||| || ||||| || || ||| | || || Sbjct 805 TTCCCCGCGGCCGGATCATCGAGATCTACGGTCCGGAATCCTCCGGTAAGACCACGCTCA 746 Query 66576 GTCTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTG 66635 ||| || ||| | || || | |||| |||| |||| |||||| | ||||||||| | Sbjct 745 CTCTGCATGCGATCGCGAACGTGCAGCGCTCCGGCGGCATCGCCGCGTTCATCGACGCCG 686 Query 66636 AGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGG 66695 ||||| | || ||||| || ||||||||| |||||| || ||| ||||| || ||| Sbjct 685 AGCACGCGCTCGACCCCGATTACGCCAAGAAGCTCGGAGTCGACATCGACTCGCTGCTGG 626 Query 66696 TGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTG 66755 || |||||||| || || |||||||| || ||||||| ||| | |||||| || | Sbjct 625 TGTCGCAGCCCGACACGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTCGTCCGCTCGG 566 Query 66756 GCGAGCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 66815 | | | | | |||| ||| | |||||||| ||||| || |||||| |||||| ||| Sbjct 565 GAGCGATCGACCTCGTGGTCATCGACTCCGTCGCGGCGCTCGTGCCGAAGGCCGAGATCG 506 Query 66816 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGC 66875 | || || || || || |||||||| || || || || |||||||| ||||| | | Sbjct 505 AGGGTGAGATGGGCGATTCCCACGTCGGTCTCCAAGCACGGCTCATGTCGCAGGCGCTTC 446 Query 66876 GCAAGCTCACTGG----CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAG 66931 ||||||| || || | | ||| || || ||||| || | ||| |||||||| Sbjct 445 GCAAGCTGACCGGTGGGCTCAATC---AG-ACGAACACCACGATGATCTTCATCAACCAG 390 Query 66932 TTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAG 66991 ||||||||||||||||| ||| || ||| | ||||||||| | || |||||| Sbjct 389 CTGCGCGAGAAGATCGGC---GTGTTCTTCGGGTCTCCCGAGACCACCGCCGGTGGAAAG 333 Query 66992 GCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAA 67051 || ||| ||||||||| || || || |||| ||||||| |||| || ||||| Sbjct 332 GCGCTGAAGTTCTACGCGTCGGTGCGCCTGGACATCCGTCGTATCGAGACGCTCAAGGAC 273 Query 67052 GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCG 67111 || |||||||| ||||||||||| ||||| || ||||||||||||||| |||| ||| Sbjct 272 GGTACCGAGGCTGTGGGCAACCGCACGCGGGTCAAAGTCGTCAAGAACAAGATGGCGCCG 213 Query 67112 CCGCACCGCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAA 67171 ||| | | ||||||||| | || | ||||| | || |||||||| |||| ||| Sbjct 212 CCGTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGTATCTCGCGAGAGG--GAA 155 Query 67172 --CTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGT 67229 ||| |||| | | ||| ||| || | |||||||||||||||||||||| || || Sbjct 154 GCCTCATCGATTTCGGCGTCGAGCACGGGATCGTGAAGAAGTCGGGCGCCTGGTACACGT 95 Query 67230 ACGGGGACAAGAACGTCGCCCAGGGCAAG 67258 ||| | || | ||| |||||||||| Sbjct 94 ACGACGGGGAGCAGCTCGGCCAGGGCAAG 66 >seq780 Length=13225 Score = 125 bits (138), Expect = 3e-24 Identities = 327/497 (66%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 66620 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66679 |||| |||||| ||||||||| | | || | | ||||||||||| || ||||| ||| Sbjct 7507 GCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 7566 Query 66680 CTCGACAACCTCGTGGTGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGAC 66739 | ||| || || ||||| || | || || | || ||||| |||| ||| Sbjct 7567 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGAC 7626 Query 66740 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTG 66799 ||| || ||||| | | || | |||| || | ||| |||||||| || ||| Sbjct 7627 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 7686 Query 66800 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 66859 ||||| |||||||| || ||||| || || ||| || | | ||||| ||||| | Sbjct 7687 CCGCGTGCCGAGCTTGAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCAAGCGCGATTA 7746 Query 66860 ATGTCACAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGACG 66916 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 7747 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 7804 Query 66917 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACC 66976 ||| | |||||| | ||| ||||| | |||| | || ||| | |||| | Sbjct 7805 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 7860 Query 66977 ACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATC 67036 || |||| || | || ||| | | ||||| || || || |||| | || |||| Sbjct 7861 ACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAAG 7920 Query 67037 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 67096 | | ||||||||||| || |||||||||| || |||||||| | |||| Sbjct 7921 ACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 7980 Query 67097 AACAAGCTGGCCCCGCC 67113 ||||||||||| |||| Sbjct 7981 AACAAGCTGGCGTCGCC 7997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242843162158506