Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq1626 1169 0.0 seq4945 219 1e-52 >seq1626 Length=4816 Score = 1169 bits (1296), Expect = 0.0 Identities = 1955/2780 (70%), Gaps = 107/2780 (4%) Strand=Plus/Minus Query 38032 GCGGGTGGCACCCGTG-GAGTCGAACGCACCGGCCTTGATCAAGGACTCGACGGCTCGCT 38090 ||| || || |||| | ||||||||||| || |||||||||| |||||||||| || | Sbjct 3878 GCGTGTCGC-CCCGAGCGAGTCGAACGCGCCCGCCTTGATCAGCGACTCGACGGTCCGTT 3820 Query 38091 TGCTC---ACGTTCGCCTGAGTCGCCGACCGGAGGAAGTCCGGCAGGGAGGTGAACTTCC 38147 || | ||| | | || | |||| |||||||| | | ||| ||||| | Sbjct 3819 TGTTGGCGACGGGCACGGGAACCTTCGAC---AGGAAGTCGTGGAAGGACGTGAAGCGCG 3763 Query 38148 CC--CAGGCTTCCCGCAGTTGGACGATCTCCTCGACCATGCTCTCGCCCACGTTCTTCAC 38205 || | ||| |||| |||||| | ||||||| | | | || ||||| ||| Sbjct 3762 CCTCCTGGCGGGCCGC-----GACGATGGCGTCGACCACGTTAGCCCCGACGTTGCGCAC 3708 Query 38206 GGCGGTCAGTCCGAAGCGGATCTCCCGCTCCCCGTTCGGGGTGAAGGAGGAGTTCGAGAC 38265 ||| ||||||||||||||| || || ||| | | |||| || | |||| | Sbjct 3707 CGCGCCCAGTCCGAAGCGGATGTCT---TCGCCGACGGCCGCGAAGTAGCGGATCGACTC 3651 Query 38266 CGACACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGC 38325 | |||||| |||||||| ||| | ||||||||| | ||||||| |||||| ||| Sbjct 3650 CCCCACGTCCGGCGGCAGCACCTTGATGCCCATGCGTCGGCACTCGTTGAGGTAGACGGC 3591 Query 38326 CATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTA 38385 |||||||| |||| ||||||||| || || | |||||||||||||||||||| || Sbjct 3590 CATCTTGTCCTTGGAGTCGCCCACGCTCGTCAGGAGCGCCGCCATGTACTCGGCCGGATA 3531 Query 38386 GTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTT 38445 || | ||||||||||||||| | ||||| | ||||||||||| || |||||||| || Sbjct 3530 ATGGGCCTTCAGGTACGCCGTCCAGTAGGACACCAGTCCGTACGCAGCCGAGTGCGCTTT 3471 Query 38446 GTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCGTC 38505 |||||| ||||| | | |||||| | || | |||||||| |||| ||| || | || Sbjct 3470 GTTGAACGCGTAGTCCGAGAAGGGCAGCAGGATGTCCCACAGCGCCTTGATCGCCGACTC 3411 Query 38506 CGAGTAGCCTCGCTCGCTTGCTCCCTTCTG-GAAGTTCACGAACTCCTTGGCCAGCACCT 38564 |||||| ||||| ||| |||| | | |||| | || ||| |||| | ||| | Sbjct 3410 GCCGTAGCCCCGCTC-CTTCATCCCACCCGAGAAGCCCTCGTACTGCTTGTCGAGC---T 3355 Query 38565 CGGGCTTCTTCTTG---CCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACC 38621 ||| ||||||||| ||||| || || ||||||| ||| ||||| ||||| | | | | Sbjct 3354 CGGACTTCTTCTTCTTCCCCATCGCACGGCGGAGAATGTCCGCCTGGCCGAGCGAGAAGC 3295 Query 38622 CGGCCAGGATCTGCGC---CGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGG 38678 | |||| ||||||| |||| | ||||||||||| |||||||| || ||| || Sbjct 3294 CCGCCACCTTCTGCGCGATCGCCATG---ACCTGCTCCTGATAGATGATCAGGCCGTAGC 3238 Query 38679 TCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCTCCT 38738 | ||| ||||| || ||||||||||| | |||||||||||||||||||| ||||| Sbjct 3237 TGATGTCGAGGATGTCTTTGAGCGGCTCCTCGAGCTCGGGGTGGATCGGCGTGACCTCCT 3178 Query 38739 GCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGACCCGGAC 38798 |||| ||||||||||||||||||||||| |||| ||| | ||||| || || || | Sbjct 3177 GCTGACCGTTCTTGCGGAGGGCGTAGTTGATGTGGGAGTTCGCCCCCATGGGGCCGGGTC 3118 Query 38799 GGTACAGCGCCACGACGGCGGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGCGGAGCA 38858 |||| ||||| | |||||| || | ||||||||| | ||| ||||| || || || |||| Sbjct 3117 GGTAGAGCGCGATGACGGCCGACACGTCCTCGAAGTTGTCGGGCTTGAGAAGTCGCAGCA 3058 Query 38859 GGGAGCGCATCGCGCCGCCGTCGAGCTGGAACACCGAGAGCGTGTCGCCCCTGGCCAGCA 38918 | |||||||||| || ||||||||||||||||| ||| |||||||| | || |||| Sbjct 3057 GCGAGCGCATCGGACCACCGTCGAGCTGGAACACGCCGAGGGTGTCGCCACGGGTGAGCA 2998 Query 38919 GCTCGTACGTCGCGGGGTCATCCAGCGGGATGTTCTCGATGTCGACGTGCTCACCACGGT 38978 ||||||||| ||| | ||| || |||| || || ||||| ||||| | ||| || |||| Sbjct 2997 GCTCGTACGCCGCTGTGTCGTCGAGCGCGAGGTGCTCGAGGTCGAGCTCCTCGCCCCGGT 2938 Query 38979 TGCGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGT 39038 | |||||||| |||| |||||| |||||||||||||| || ||||||||||||| Sbjct 2937 TCATCCGGATGTTGTCGAGCGCGTCCGAGATGATCGTGAGGTTGCGCAGCCCGAGGAAGT 2878 Query 39039 CCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGTCGAACTGCGTGATCGTTACG- 39097 ||||||| | ||| ||||| || ||||| ||| |||||||||||||||| || | | Sbjct 2877 CCATCTTGATCAGACCCAGGGCTTCGCACGACGGATAGTCGAACTGCGTGA-CGATCTGT 2819 Query 39098 CCGTCC-GCAGGCCGCACCCACG-TCGGGATGTGATCGACCAGCGGCTCGTCGGACATGA 39155 |||||| || || | | || | |||||||| |||| ||| ||||| ||||||| Sbjct 2818 CCGTCCTGCTCGCGG--CGCATGATCGGGATGATGTCGAGCAGGGGCTCCGACGACATGA 2761 Query 39156 TCACACCGGCTGCGTGCACGCCCATCTGCCGGACGAGACCTTCGAGGCCACGCGCGAGGT 39215 | || || || ||||| |||||| ||| || || || ||||| || | || ||| Sbjct 2760 TGACGCCCGCGGCGTGAACGCCCCACTGACGCTTCAGCCCCTCGAGCCCGAGAGCCCGGT 2701 Query 39216 CAATGACCTCCTTCGCGTCCTTGTCGTTCTCGTACAGCGCCCGGATCTCGCCCGCCTCGT 39275 | | |||| ||| || || ||| | ||| || || |||| ||||| ||||| | Sbjct 2700 CGAAGACCGTCTTGGCCTCGGGATCGGTGTCGATGAGGGCGCGGAACTCGCTGGCCTCTT 2641 Query 39276 CGTAGCGCGGGTGCTCCGGGTTGGTGATGCCCTCCAGGGGCATCGACGCGCCCATCACAT 39335 | ||||||| |||| | || | || || ||| ||||| | |||||| || Sbjct 2640 TGAAGCGCGGATGCTGGGCGTCGTACATCCCGCTCAGCGGCATGTCCTTGCCCATGACCG 2581 Query 39336 CGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGA-CCTGAAAGGGCTTGTCCAGCACGCGG 39394 | | ||| |||||||||||| ||| || | ||||| ||| | ||||||| ||| Sbjct 2580 CCGGCGGCATGGCCTTGGTCAGCCGCTCCCCCATGCTGAACGGG-AAGCCCAGCACCCGG 2522 Query 39395 GCCGCGTCCTTCATCGCGTTGCGGGCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACC 39454 | |||||||||| || | || |||||| ||||||||||| ||||||| |||||| Sbjct 2521 CCTGCGTCCTTCAGAGCCTGCTTGGACTTGATGGTGCCGTACGTCACGATCTGCGCGACC 2462 Query 39455 TTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCG 39514 ||| ||||||||||||||||||||| |||||| ||||| ||||| ||||| ||| Sbjct 2461 CGCTCGGAGCCGTACTTCTCGGTGACGTAGTCGATCACCTCGCCGCGGCGCCGGTCGTCG 2402 Query 39515 AAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATG 39574 ||||||| || | ||||||||| |||||||| || ||||||||||| || |||||||| Sbjct 2401 AAGTCGACATCGAAGTCGGGCATCGAGACGCGGTCGGGGTTCAGGAAGCGTTCGAAGATC 2342 Query 39575 AGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCA 39634 || ||||| || ||||| ||||||||||| | | |||||| ||| ||| ||| || Sbjct 2341 AGGCCGTGCTCGAGCGGGTCGAGGTCGGTGATGCGCATGGCGTAGGCGACCATCGACCCC 2282 Query 39635 GCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAG 39694 || | || || || || || || || | | ||||| ||||| |||||| ||||||| Sbjct 2281 GCGCCGGAACCGCGGCCGGGACCCACGCGGATGCCGTTGTCCTTGGCCCAGTTGATGAAG 2222 Query 39695 TCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTAG 39754 ||||||||||| |||||||| |||||||||||||| ||| || || ||||||| Sbjct 2221 TCGGCGACGACCAGGAAGTAGCCGGGGAACCCCATCTGCAGGATGATTCCGGTCTCGTAC 2162 Query 39755 TCGACCTGCGTTCGGTGCTCGTCGTCGTACCCCTGCGGGAAGCGACGGTCCATGCCGATG 39814 ||| ||||| | ||| | ||| | || | |||| | || | | ||| | Sbjct 2161 TCGGCCTGCTTGCGGACGTTGTCCGGGATGCCGTTCGGGTACCGGTAATGGAGGCCCTTC 2102 Query 39815 AGCACCTGCTCGCGGAAGAACTGGCCCTCCGTCTGGCCTTCGGGCACCGGGAAGCGGGGC 39874 |||| || | | | | |||| |||| || |||||||| |||||||| ||| Sbjct 2101 TCGACCTCCTTGACCAGCCAGCTGTCCTCGGTCTCACCGTCGGGCACGGGGAAGCGCGGC 2042 Query 39875 ATGAGGTTCTGGAACTCGAACATGCCGGTCGTGTCGACC------CGGTCAGCGATCTCC 39928 ||| || ||| |||| || | | |||||| || || ||||| Sbjct 2041 ATGTAGT--TGGCGCTCG----TGTTGAAC---TCGACCTCGCATCGCTCGGCGATGAGG 1991 Query 39929 AGCGTGGTGCGCATCCCCCACGACCAGATG-TCGGAGCTGTCGATGGCTGC--CATCTCG 39985 |||||| || || | | | || | || || || | ||| |||| |||||| Sbjct 1990 AGCGTGTTG----TCGCACGCCTCCGGGTGCTC---GCGGAAGAT--CTGCCGCATCTCC 1940 Query 39986 GCGGCCGACTTCAGGTAGTACCCTTCGCCCTCGAACCGGAAGCGATCCTCCTGGTAGAGG 40045 |||| ||| | ||||||||| ||||| |||||| |||||| | | || |||| Sbjct 1939 TGCGCCGTCTTGACGTAGTACCCGTCGCCATCGAACTTGAAGCGGTTGGGGTCGTCGAGG 1880 Query 40046 GACGAGCCGGTCTGGACGCACAGCAGGGCGTCGTGGGCCGCAGCCTCCTCGACCCGCGTG 40105 | ||| || | ||| ||||||||||| || |||| || | ||||| | | ||| Sbjct 1879 GTCGATCCCGACTGCACGCACAGCAGCGCCGCGTGCGCGTCGGCCTCGTGCTGGTGGGTG 1820 Query 40106 TAGTGCGAGTCGTTGGTGACCACCGGGGTGAGACCGAGGCGCTGACCGAGGCGG--TAGA 40163 ||||| ||||||||||| ||||| | | || ||||| || || |||| ||| Sbjct 1819 TAGTGGGAGTCGTTGGTCGCCACCAGCGGGATGCCGAGATCCTTCGAGATGCGGATCAGA 1760 Query 40164 --GGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGAA 40221 |||| || || ||||||||||| || ||||| ||||||||||| |||| | Sbjct 1759 TCGGTCATC----ACCCGCCGCTCGATGGAGAGCCCGTGATCCATGATCTCGGCGAAGTA 1704 Query 40222 GTTGTCCTTCCCGAAGATCTCCCGCCACTTCGCAGCCTCGGCGACGGCCTCCTCGTACTG 40281 ||| ||| | |||||||| ||| | ||| ||| ||| | || || | |||||||| Sbjct 1703 GTTCTCCCTGCCGAAGATGTCCTGGAACTCCGCGGCCGCCGCCCGCGCGGCGTCGTACTG 1644 Query 40282 ACCGAGGTTGAGCCGGGTCATCACAGCACCACCGGGGCATCCCGTGGTGCCGATCAGGCC 40341 ||||| || || ||| ||| | || ||||| ||||| || ||||||| || Sbjct 1643 GCCGAGACGCAGTCGCGTCTGCACCTCGCCCGACGGGCACCCCGTCGTCGCGATCAGTCC 1584 Query 40342 CTCTGCGT-GCTCGGCCACCAGCTCGGCGTCCATGCGCGGGTACTTCCCG-AGCAGACCC 40399 || ||| | || | | ||| || |||||| ||||| ||| | || | ||| Sbjct 1583 CTTGCCGTAGGTC-TCGAGCAGTTCCCGGTCCATACGCGG---CTTGAAGTAGTA-CCCC 1529 Query 40400 TCGCTGTACGAGCGAGAGGAGAGCTTGAACAGGTTGTGCAGGCCGGTCTTG-TTCGTCGC 40458 || || ||| ||| |||| ||| || ||||||| ||| || || | | | Sbjct 1528 TCCATGCTCGACAACGAGCTGAGCCGGAAGAGATTGTGCATGCCCTCGGTGCTTTGACTC 1469 Query 40459 GAGCATGGTCATGTGGGTGTAGGCACCCCGACCGCTCACGTCGTACCGCT--TCTGCTCG 40516 | ||| |||||||||||||| || || ||| || |||| |||| ||||||| Sbjct 1468 CA-CATCGTCATGTGGGTGTACGCGCCGGAGCCGGAGACATCGT--CGCTGCGCTGCTCG 1412 Query 40517 GGCGTGCCCCACTGGACCCGCTCCTGGTCGGAGC---GCGAGCCCGGCGCGACGTACGCC 40573 || ||||||||||| || || | |||| || ||| ||| || | |||||| ||| Sbjct 1411 GGGGTGCCCCACTGCACGCGGGATTTGTCGCTGCGGTGCGTGCCGGGGGTGACGTAGGCC 1352 Query 40574 TCGATCCCGATGATGGGCTTGACCCCAGCGGCCTGCCCCTGCG-TGAAGAAGTCGTACGC 40632 |||| |||||||| ||||||| || || |||| | ||| || |||| ||| ||| Sbjct 1351 TCGAGACCGATGATCGGCTTGATGCCCGCCGCCT-TGGCGGCGTTGTAGAACTCGAACG- 1294 Query 40633 ACCGTGCAG--GTTGCCGTGGTCGGTCATCGCGAGGGCCTTCATGCCCTGCGCCTTGGCC 40690 ||| | || ||||||||||||||| | |||| |||| |||||| | | |||| Sbjct 1293 -CCGCGAAGGTGTTGCCGTGGTCGGTGACGGCGATGGCCGGCATGCCGT---AATCGGCC 1238 Query 40691 TCGGCGAACATGTCCTTCAGTCGA-----GCCGCCCCGTCGAGAAGGCTGTACTCGGAGT 40745 | || | ||| | | ||| |||||||||||||| | ||||||| || Sbjct 1237 GCCGCCTGC--GTCATGGCGCCGATCTTGGCCGCCCCGTCGAGCATCGAGTACTCGCTGT 1180 Query 40746 GGACATGCAGGTGGACGAAG 40765 | || |||||||| |||||| Sbjct 1179 GCACGTGCAGGTGAACGAAG 1160 >seq4945 Length=1226 Score = 219 bits (242), Expect = 1e-52 Identities = 369/526 (70%), Gaps = 21/526 (4%) Strand=Plus/Minus Query 36152 AGTAGTCCTCCATGCGCTCCGCGACCTGCTCAATCTCTCGCTGCGGGAACGAGGGGTACG 36211 || || ||||||| ||| ||| | ||| ||||| ||||||||||| |||||| | | Sbjct 1139 AGAAGGCCTCCATCTTCTCGGCGCACATCTCGATCTCGCGCTGCGGGAAGGAGGGGAA-G 1081 Query 36212 TCGA-CTCGTCGTCGGTGGTGCGCAGCGAGAGGAAGTGCATGAGCGACCGCGCGTTGCAG 36270 | | | | ||| | |||||||||| || ||||||| ||| ||||||||||| || | Sbjct 1080 TGGCTCCCCTCGGCCTTGGTGCGCAGAGACAGGAAGTTCATCAGCGACCGCGCATTCATG 1021 Query 36271 GTCGCGTAGAACGAGGTGAAGATCCCGACCGGAAGGATGGACCGGGCTACCTCTCGGGCG 36330 || |||| | ||||| | |||| | ||| || | | ||||| |||||||| ||| Sbjct 1020 GTGACGTACATCGAGGAGTAGATGTTCAGCGGCAGCACGATACGGGCCACCTCTCGCGCG 961 Query 36331 ATGCCCGCATCGAGCAGGCTCTGGTA---CTCGC---CGTAGATCTCG--GCGTACACAC 36382 | |||||| | |||| | |||||| |||| ||| | | || |||| | ||| Sbjct 960 ACGCCCGCCGCCAGCATCCGCTGGTAGGTCTCGAATGCGTCGGTGGCGACGCGT-CGCAC 902 Query 36383 CCTCGAAGACGTAGGGGACGAGCCCCTTCTGGTAGGTCGAGCCGTCCTCGAAGGTGTAGG 36442 || | ||| | |||| | | | ||| | || || |||| ||| ||||| Sbjct 901 CCCCT----CGTCG---ACGACCGCGTGCTGCTCGGGCGTGCCGGGGAGGAACTCGTAGG 849 Query 36443 CACCGGCCTTGCCGACCTGAACCAGGGGGCGGTCCGGAGCGGGCACGTAGAAGACGGGCT 36502 | |||| ||| |||||||| |||||| |||||||| || || ||||||||||| ||| Sbjct 848 CTCCGGGCTTTCCGACCTGCACCAGGTTGCGGTCCGCCGCCGGGACGTAGAAGACCGGCC 789 Query 36503 CCAGGTTCTTGTAGCGCCCGCTCTCCTCGTTGTAGCTCCAGCCAGCGCGGTGACGGAAGA 36562 ||| | | ||| | ||| |||||||||||| | || | |||||| || | || Sbjct 788 GCAGCTCCCGGTACCTGCCGGACTCCTCGTTGTA---CGAGGCGATGCGGTGCCGCATGA 732 Query 36563 ACTCCCGAGCCACGAAGATCGGGGCCTCGATGTAGAAGGTGAAGCTGTTGTGCTCGAAGG 36622 | || || ||||||||||| |||| | |||||| || | |||||||||||||| Sbjct 731 ATTCGCGGAAGACGAAGATCGGCGCCTGAACGTAGAACGTCATCGAGTTGTGCTCGAAGG 672 Query 36623 GGCTGCCGTGCCGGTCCCGCATGAGGAAGTTGATCAGCCCCTCGTC 36668 | ||||| || || ||||||||| |||||||||| |||| ||| Sbjct 671 GCGACCCGTGTCGATCGCGCATGAGGTAGTTGATCAGGCCCTTGTC 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160228660916850