Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq4983 428 2e-115 seq780 145 4e-30 >seq4983 Length=1217 Score = 428 bits (474), Expect = 2e-115 Identities = 582/807 (72%), Gaps = 15/807 (2%) Strand=Plus/Minus Query 66081 GTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTAC 66140 || || ||||| |||||||||| ||||| |||||| ||| || ||| |||| ||| Sbjct 863 GTCGAGGTCATCTCCACCGGCTCCATCGCGTTGGACGTCGCCCTCGGCGTCGGCGGGCTT 804 Query 66141 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 66200 || | |||||| | | || |||||||| || ||||| || || ||| | || || | Sbjct 803 CCCCGCGGCCGGATCATCGAGATCTACGGTCCGGAATCCTCCGGTAAGACCACGCTCACT 744 Query 66201 CTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAG 66260 || || ||| | || || | ||| |||| |||| ||| || | ||||||||| ||| Sbjct 743 CTGCATGCGATCGCGAACGTGCAGCGCTCCGGCGGCATCGCCGCGTTCATCGACGCCGAG 684 Query 66261 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 66320 ||| | || ||||| || ||||||||| |||||| || ||| ||||| || ||||| Sbjct 683 CACGCGCTCGACCCCGATTACGCCAAGAAGCTCGGAGTCGACATCGACTCGCTGCTGGTG 624 Query 66321 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 66380 ||||| ||||| || |||||||| || ||||||| ||| | |||||| || || Sbjct 623 TCGCAGCCCGACACGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTCGTCCGCTCGGGA 564 Query 66381 GAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 66440 | | | | |||| ||| | ||||| || ||||| || |||||| |||||| |||| Sbjct 563 GCGATCGACCTCGTGGTCATCGACTCCGTCGCGGCGCTCGTGCCGAAGGCCGAGATCGAG 504 Query 66441 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 66500 || || || || || |||||||| || || || || |||||||||||||| | ||| Sbjct 503 GGTGAGATGGGCGATTCCCACGTCGGTCTCCAAGCACGGCTCATGTCGCAGGCGCTTCGC 444 Query 66501 AAGCTCACC----GGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTT 66556 ||||| ||| ||| | || ||| || ||||| || | ||| |||||||| | Sbjct 443 AAGCTGACCGGTGGGCTCAAT---CAG-ACGAACACCACGATGATCTTCATCAACCAGCT 388 Query 66557 GCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGC 66616 ||||||||||||||| |||| || ||| | |||||||||| | || || ||||| Sbjct 387 GCGCGAGAAGATCGG---CGTGTTCTTCGGGTCTCCCGAGACCACCGCCGGTGGAAAGGC 331 Query 66617 TTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGG 66676 ||| ||||||||| || || ||| |||| ||||||| |||| || ||||| || Sbjct 330 GCTGAAGTTCTACGCGTCGGTGCGCCTGGACATCCGTCGTATCGAGACGCTCAAGGACGG 271 Query 66677 CGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66736 |||||||| ||||||||||| ||||| || ||||||||||||||| |||| ||||| Sbjct 270 TACCGAGGCTGTGGGCAACCGCACGCGGGTCAAAGTCGTCAAGAACAAGATGGCGCCGCC 211 Query 66737 GCACCGCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAA-- 66794 | | | ||||||||| | || | ||||| | || |||||||| |||| ||| Sbjct 210 GTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGTATCTCGCGAGAGG--GAAGC 153 Query 66795 CTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTAC 66854 ||| |||| | | ||| ||| || | |||||||||||||||||||||| || |||| Sbjct 152 CTCATCGATTTCGGCGTCGAGCACGGGATCGTGAAGAAGTCGGGCGCCTGGTACACGTAC 93 Query 66855 GGGGACAAGAACGTCGCCCAGGGCAAG 66881 | | || | ||| |||||||||| Sbjct 92 GACGGGGAGCAGCTCGGCCAGGGCAAG 66 >seq780 Length=13225 Score = 145 bits (160), Expect = 4e-30 Identities = 332/498 (67%), Gaps = 9/498 (2%) Strand=Plus/Plus Query 66242 TGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 66301 ||||| |||||| ||||||||| | | || | | ||||||||||| || ||||| || Sbjct 7506 TGCCTTCATCGATGCTGAGCACGCTATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGA 7565 Query 66302 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66361 | | ||| || || ||||||||| | || || | || ||||| |||| || Sbjct 7566 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGTGAAGAAGCGCTGGAAATCGCGGA 7625 Query 66362 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 66421 | ||| || ||||| | | || | |||| || | ||| ||||||||| || || Sbjct 7626 CACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGT 7685 Query 66422 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 66481 |||||| |||||||| || ||||| || || ||| || | | ||||| ||||| | Sbjct 7686 GCCGCGTGCCGAGCTTGAGGGCGAGATGGGAGACCAGCAGATTGCGCTGCAAGCGCGATT 7745 Query 66482 CATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGAC 66538 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 7746 AATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA- 7804 Query 66539 GCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGAC 66598 ||| | |||||| | ||| ||||| | |||| | || ||| | ||| Sbjct 7805 --TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGT 7859 Query 66599 CACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCAT 66658 ||| |||| |||| || ||| | | ||||| || || ||| |||| | || |||| Sbjct 7860 CACGTCGGGTGGCACAGCGTTGCGCTATTACGCGTCCGTGCGCCTGGACATTCGCCGCAA 7919 Query 66659 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAA 66718 | | ||||||||||| || |||||||||| || |||||||| | ||| Sbjct 7920 GACGGCTATCAAGGAAGGCGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAA 7979 Query 66719 GAACAAGCTGGCCCCGCC 66736 |||||||||||| |||| Sbjct 7980 GAACAAGCTGGCGTCGCC 7997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240942500204700