Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_030901.1 Length=92618 Score E Sequences producing significant alignments: (Bits) Value seq4945 150 1e-31 >seq4945 Length=1226 Score = 150 bits (166), Expect = 1e-31 Identities = 273/394 (69%), Gaps = 4/394 (1%) Strand=Plus/Plus Query 56776 CGGCACGGATCGCCGTTCGAGCACTCCGTCTTCACCTTCCTGATCGAGTGCCCCATCTTC 56835 || ||||| ||||| ||||||||| | | || ||| | || || |||||| Sbjct 659 CGACACGGGTCGCCCTTCGAGCACAACTCGATGACGTTCTACGTTCAGGCGCCGATCTTC 718 Query 56836 GTTGCGCGTGAGTTCATGCGCCACCGAATCGCCTCGTACAACGAGGAATCCGGTCGATAC 56895 || || || |||||||| ||||| |||||||||||||||||||| ||||| | ||| Sbjct 719 GTCTTCCGCGAATTCATGCGGCACCGCATCGCCTCGTACAACGAGGAGTCCGGCAGGTAC 778 Query 56896 AAGGTCATGAAGGGCGTGTTCTACGTCCCGGCCGACGACCGGCCGCTGGTCCAGGTAGGC 56955 || || | || |||||||||||||| | ||||| ||||| ||||| || Sbjct 779 CGGGAGCTGCGGCCGGTCTTCTACGTCCCGGCGGCGGACCGCAACCTGGTGCAGGTCGGA 838 Query 56956 AAGCCGGGTGAGTATCGA-TTCGAGGCCGGGACGGTCGAGCAGCATGCCGTTGTC-ACGA 57013 ||||| || | || ||| ||| |||| ||| ||||||||| || || ||| |||| Sbjct 839 AAGCCCGGAGCCTA-CGAGTTCCTCCCCGGCACGCCCGAGCAGCACGCGGTCGTCGACGA 897 Query 57014 GAGCCTTTGAGCTTGCCGCCGCCTTCACCTACGGCCTCTACGAGCAGATGTTGGCCATGG 57073 | | | || | | |||| || | | | || |||| ||| |||| |||| || Sbjct 898 GGGGGTGCGA-CGCGTCGCCACCGACGCATTCGAGACCTACCAGCGGATGCTGGCGGCGG 956 Query 57074 GGATCGCCCGCGAAGTCGCTCGCGACGTCCTGCCGTTCCAGCTATACACCTCGTTCTACG 57133 | |||| || || || || || ||| |||||| | | | ||| ||||| | |||| Sbjct 957 GCGTCGCGCGAGAGGTGGCCCGTATCGTGCTGCCGCTGAACATCTACTCCTCGATGTACG 1016 Query 57134 TCACCATGAACGCGCGCGGCCTGATGAACTTCCT 57167 |||||||||| ||||| |||||||||||||| Sbjct 1017 TCACCATGAATGCGCGGTCGCTGATGAACTTCCT 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296231284547821