Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq939 105 2e-18 >seq939 Length=10715 Score = 105 bits (116), Expect = 2e-18 Identities = 212/310 (68%), Gaps = 11/310 (4%) Strand=Plus/Minus Query 33987 GCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTG 34046 |||||| ||||||||||| | ||| | || ||| ||||| | || |||| | | Sbjct 3690 GCCGTTTCGGTGCTTCGCCACGATGAGGTCGGCCTCGCCGGCGCGTGGGCTGTCGCGCTC 3631 Query 34047 ATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGA 34106 || || | || |||| | | | || || |||||| ||||||||||||| || || Sbjct 3630 GTACGCCGCCTCACGGTGGAGCAGGACGACCATGTCGGCATCCTGCTCGATCGATCCCGA 3571 Query 34107 CTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGC-CGCTGCTCCAGGGAGCGGTTGA 34165 |||||| ||||| |||| ||| ||||| |||| |||||||| | ||||| | Sbjct 3570 CTCGCGGAGGTCGGACAGGGCCGGCTTCTTGT-CGGCGCGCTGCTCAGGACCACGGTTCA 3512 Query 34166 GCTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGCACTGGCGGG 34225 ||||||||||| ||||||| || | |||||| |||| || ||||| | ||||| Sbjct 3511 GCTGCGACAGCGCGATCACCGGCACCTGCAGCTCCTTGGCGAGAAGCTTCAGCGCGCGGG 3452 Query 34226 ACATGTCGCTGACGTCCT--CGGTGCGAGTTGA----CTTGCCGGAGCTCTCCAGCAACT 34279 | | || ||| |||| | |||| | || |||||| |||| || | || Sbjct 3451 AGAACTCCGAGACCTCCTGCTGACGCGACTCGACGCGCTTGCC---GCTCGTCATGAGCT 3395 Query 34280 GCAGGTAGTC 34289 |||||||||| Sbjct 3394 GCAGGTAGTC 3385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160452645065910