Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq1923 728 0.0 seq4612 82.4 5e-11 >seq1923 Length=3841 Score = 728 bits (806), Expect = 0.0 Identities = 692/883 (78%), Gaps = 6/883 (1%) Strand=Plus/Minus Query 78283 CAACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGACATCCCATCCTGGGACACCCT 78342 |||||||||| ||||||||||||| ||| ||||||||||||||| || ||| |||| || Sbjct 2020 CAACTTCTGGCTGCCCGAGAAGGTGCCGCTGTCCAACGACATCCAGTCGTGGAACACGCT 1961 Query 78343 TACGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACCGGCCTCACCCTGCTCGACAC 78402 || ||| | ||| || || || ||||| || |||||||| || || || || ||||| Sbjct 1960 GACCCCGCAGGAGCAGACGCTGACGATGCGGGTCTTCACCGGTCTGACGCTCCTGGACAC 1901 Query 78403 CATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGACGCCAACACCCCGCACGAGGA 78462 |||||||||||| || || || ||||||| ||| |||| || | ||||||||||||||| Sbjct 1900 CATCCAGGGCACCGTGGGGGCGGTCTCGCTGATCCCCGATGCGATCACCCCGCACGAGGA 1841 Query 78463 GGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTACACGCCAAGTCCTACAGCTCGAT 78522 ||||||| |||||||||||| |||||||||||||| ||||||||| |||| ||||| Sbjct 1840 GGCGGTGTACACCAACATCGCCTTCATGGAGTCGGTGCACGCCAAGAGCTACTCGTCGAT 1781 Query 78523 CTTCTCAACGCTATGCTCCTCCAAGCAGATTGACGAGGCGTTCCGTTGGTCGGAGGAGAA 78582 |||||| ||||| ||||| | |||| || || || ||||| |||||| |||||| Sbjct 1780 CTTCTCGACGCTGTGCTCGACGCCCGAGATCGATGACGCCTTCCGCTGGTCGACGGAGAA 1721 Query 78583 CGAGTACCTGCAGCGCAAGGCCCAGATCGTCCTGGACTACTACCGCGGCGACGACCCCTT 78642 |||| |||| ||| ||||| | ||||||| |||||||||||||||||||||| ||| | Sbjct 1720 CGAGAACCTTCAGAAGAAGGCGCGGATCGTCATGGACTACTACCGCGGCGACGAGCCCCT 1661 Query 78643 GAAGCGGAAGGTGGCCAGTACGCTCCTGGAGGGCTTCCTCTTCTACTCGGGCTTCTACCT 78702 ||||| |||||||| || || || ||| ||||| |||||||||||||||||||| Sbjct 1660 CAAGCGCAAGGTGGCATCGACCCTGCTCGAGTCGTTCCTGTTCTACTCGGGCTTCTACCT 1601 Query 78703 GCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGAACACCGCGGACGTGATCCGGTTGAT 78762 |||| ||||||||||| || |||||||||||||| || ||| | ||||| | || Sbjct 1600 GCCGCTGTACTGGTCGTCGAAGGCGAAGCTGACGAACACGGCCGACATCATCCGCCTCAT 1541 Query 78763 TATCCGAGACGAAGCAGTTCATGGGTACTACATCGGATACAAGTACCAGCGAGGCCTCGA 78822 ||||| ||||| || || || || ||||||||||| ||||||| |||||| || || || Sbjct 1540 CATCCGCGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGCGCGGTCTGGA 1481 Query 78823 GACCC---AGGGGCCGGCGCGGCAGGCTGAGCTCAAGGAGTACACGTTCGATCTGCTCTC 78879 | | | | | ||||||| ||| || ||||||| ||| ||||| || || | Sbjct 1480 GCTGCTGGACGAGGCGGCGCGCCAG---GACATCAAGGACTACGCGTTCTCGCTCCTGTA 1424 Query 78880 GGAGCTCTACGACAACGAGTGTGACTACACCGAGCAGCTCTATGACGACGTCGGACTCAC 78939 ||||| |||||||||||| | |||||| || | ||||| ||||| ||||| ||||| Sbjct 1423 CGAGCTGTACGACAACGAGATCCAGTACACCCAGGATCTCTACGACGAGGTCGGTCTCAC 1364 Query 78940 CGAGGATGTCAAGAAGTTCCTGCGCTACAACGGCAACAAGGCGCTGATGAACCTCGGCTA 78999 |||||| || ||||||||||| | |||||||| ||||||||||||||||||||||||||| Sbjct 1363 CGAGGACGTGAAGAAGTTCCTTCACTACAACGCCAACAAGGCGCTGATGAACCTCGGCTA 1304 Query 79000 CGAAGCACTGTTCCCCAAGGAAGAGACCATGGCAGACCCGGCCATCATGTCCGCGCTCTC 79059 ||| || ||||||| | | ||| | ||||||| ||| |||| |||||||| Sbjct 1303 CGAGGCGATGTTCCCGGCGACCGTCACCGACGTGAACCCGGCGATCCTGTCGGCGCTCTC 1244 Query 79060 ACCAGGCGGCGACGAGAACCACGACTTCTTCTCCGGGTCGGGCTCGAGCTACGTCATCGG 79119 || || |||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 1243 GCCGAACGCCGACGAGAACCACGACTTCTTCAGCGGGTCGGGCTCGTCGTACGTCATCGG 1184 Query 79120 CAAAGCTGAAGCCACGGCAGATGAGGACTGGGACTTCTGATGA 79162 ||| || | || || | || || |||||||||||||||||| Sbjct 1183 CAAGGCCGTCGCGACCGAGGACGACGACTGGGACTTCTGATGA 1141 >seq4612 Length=1324 Score = 82.4 bits (90), Expect = 5e-11 Identities = 62/69 (90%), Gaps = 3/69 (4%) Strand=Plus/Minus Query 4263 GGGCG-TAGCTCAATTGGAAGAGCAGCGGTCTCCAAAACCGCCGG-TGTAGGTTCGAGTC 4320 ||||| |||||||||||| ||||||||||||||||||||||| || || |||||||| || Sbjct 1307 GGGCGGTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGATTC 1248 Query 4321 CTG-CCGCC 4328 ||| ||||| Sbjct 1247 CTGTCCGCC 1239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299299861675262