Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_030932.1 Length=43505 Score E Sequences producing significant alignments: (Bits) Value seq2510 131 5e-26 seq3659 127 6e-25 >seq2510 Length=2692 Score = 131 bits (144), Expect = 5e-26 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 23398 CGCTTCGTTTCGTGGGCACGGTCGAGCGCGTCGGCTACGGCGTCGAGATCGTCGTCGAAG 23457 |||| || ||| | || ||| |||||| | || ||| || || |||||||||||| Sbjct 2354 CGCTGGGTGTCGCGAGCGCGGCTGAGCGCCTGTGCGACGTAATCCAGGTCGTCGTCGAAG 2295 Query 23458 AGATCGGCGTATGTGTCGAGCGTCATAGCGGCTGACGAGTGCCCGAGCATCCGTTGCACT 23517 ||||||||||| |||||||| ||||| || || | ||| ||||||||||| || ||| Sbjct 2294 AGATCGGCGTACGTGTCGAGTGTCATCGCCGCGCTGGCGTGACCGAGCATCCGCTGTACT 2235 Query 23518 GCCTTCACGTTCGCGCCCGCCGAGATCGCGAGGCTCGCGGCAGTGTGGCGCAAGTCGTGC 23577 || || ||||| ||||| || ||| || ||||||||||| ||||| || | ||||| Sbjct 2234 GCTTTGACGTTTGCGCCGGCGCTGATAGCAAGGCTCGCGGCGGTGTGCCGGAGATCGTGA 2175 Query 23578 GCGGTGA 23584 | || || Sbjct 2174 GGGGAGA 2168 >seq3659 Length=1736 Score = 127 bits (140), Expect = 6e-25 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 23439 GTCGAGATCGTCGTCGAAGAGATCGGCGTATGTGTCGAGCGTCATAGCGGCTGACGAGTG 23498 ||| || |||||||||| ||||||||||| ||||||||||| |||||||||| ||| Sbjct 615 GTCCAGCCCGTCGTCGAACAGATCGGCGTACCGATCGAGCGTCATCGCGGCTGACGCGTG 674 Query 23499 CCCGAGCATCCGTTGCACTGCCTTCACGTTCGCGCCCGCCGAGATCGCGAGGCTCGCGGC 23558 ||| |||||||| ||||| | ||||||||| |||| || | ||||| |||||| Sbjct 675 CCCCAGCATCCGCTGCACCGACTTCACGTTGCCGCCGGCGTTCACCGCGATCGACGCGGC 734 Query 23559 AGTGTGGCGCAAGTCGTG 23576 ||||||||||| |||||| Sbjct 735 AGTGTGGCGCAGGTCGTG 752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139084557245586