Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_030936.1 Length=93843 Score E Sequences producing significant alignments: (Bits) Value seq4945 152 3e-32 >seq4945 Length=1226 Score = 152 bits (168), Expect = 3e-32 Identities = 293/425 (69%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 57692 AGGGCTTCATCGACTTCCTTGACCGGAACCGACACGGATCGCCGTTCGAGCACTCCGTCT 57751 ||||| | ||| ||| ||| || | |||||||| ||||| ||||||||| | Sbjct 630 AGGGCCTGATCAACTACCTCATGCGCGATCGACACGGGTCGCCCTTCGAGCACAACTCGA 689 Query 57752 TCACCTTCCTGGTCGAGTGCCCCATATTCGTTTCGCGTGAGTTCATGCGCCACCGAATCG 57811 | || ||| || || || || ||||| | || || |||||||| ||||| |||| Sbjct 690 TGACGTTCTACGTTCAGGCGCCGATCTTCGTCTTCCGCGAATTCATGCGGCACCGCATCG 749 Query 57812 CCTCGTACAACGAGGAATCCGGTCGATACAAGGTCATGAAGGGCGTGTTCTACGTCCCGG 57871 |||||||||||||||| ||||| | ||| || || | || ||||||||||||| Sbjct 750 CCTCGTACAACGAGGAGTCCGGCAGGTACCGGGAGCTGCGGCCGGTCTTCTACGTCCCGG 809 Query 57872 CCGACGACCGGCCGCTGGTCCAGGTGGGCAAGCCGGGTGAGTATCGA-TTCGAGGCCGGG 57930 | | ||||| ||||| ||||| || ||||| || | || ||| ||| |||| Sbjct 810 CGGCGGACCGCAACCTGGTGCAGGTCGGAAAGCCCGGAGCCTA-CGAGTTCCTCCCCGGC 868 Query 57931 ACGCTCGAGCAGCACGAGCTGGT-GACAGACCTGTTCCA-GC-TCGCCGCCGATACCGGC 57987 |||| ||||||||||| | | || ||| || | | || ||||| |||| || Sbjct 869 ACGCCCGAGCAGCACGCGGTCGTCGACGAGGGGGTGCGACGCGTCGCCACCGA---CGCA 925 Query 57988 TACAACCTCTACCAGACCATGCTCGACGCCGGCATTGCCCGGGAAGTTGCGCGCGACGTC 58047 | | | ||||||| ||||| | || ||| | || || || || || || ||| Sbjct 926 TTCGAGACCTACCAGCGGATGCTGGCGGCGGGCGTCGCGCGAGAGGTGGCCCGTATCGTG 985 Query 58048 CTGCCGTTCCAGCTGTACACCTCGTTCTACGTCACCATGAACGCGCGCGGCCTGATGAAC 58107 |||||| | | | ||| ||||| | |||||||||||||| ||||| ||||||||| Sbjct 986 CTGCCGCTGAACATCTACTCCTCGATGTACGTCACCATGAATGCGCGGTCGCTGATGAAC 1045 Query 58108 TTCCT 58112 ||||| Sbjct 1046 TTCCT 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300150999856596