Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_031029.1 Length=93686 Score E Sequences producing significant alignments: (Bits) Value seq4945 152 3e-32 >seq4945 Length=1226 Score = 152 bits (168), Expect = 3e-32 Identities = 293/425 (69%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 58199 AGGGCTTCATCGACTTCCTTGACCGGAACCGACACGGATCGCCGTTCGAGCACTCCGTCT 58258 ||||| | ||| ||| ||| || | |||||||| ||||| ||||||||| | Sbjct 630 AGGGCCTGATCAACTACCTCATGCGCGATCGACACGGGTCGCCCTTCGAGCACAACTCGA 689 Query 58259 TCACCTTCCTGGTCGAGTGCCCCATATTCGTTTCGCGTGAGTTCATGCGCCACCGAATCG 58318 | || ||| || || || || ||||| | || || |||||||| ||||| |||| Sbjct 690 TGACGTTCTACGTTCAGGCGCCGATCTTCGTCTTCCGCGAATTCATGCGGCACCGCATCG 749 Query 58319 CCTCGTACAACGAGGAATCCGGTCGATACAAGGTCATGAAGGGCGTGTTCTACGTCCCGG 58378 |||||||||||||||| ||||| | ||| || || | || ||||||||||||| Sbjct 750 CCTCGTACAACGAGGAGTCCGGCAGGTACCGGGAGCTGCGGCCGGTCTTCTACGTCCCGG 809 Query 58379 CCGACGACCGGCCGCTGGTCCAGGTGGGCAAGCCGGGTGAGTATCGA-TTCGAGGCCGGG 58437 | | ||||| ||||| ||||| || ||||| || | || ||| ||| |||| Sbjct 810 CGGCGGACCGCAACCTGGTGCAGGTCGGAAAGCCCGGAGCCTA-CGAGTTCCTCCCCGGC 868 Query 58438 ACGCTCGAGCAGCACGAGCTGGT-GACAGACCTGTTCCA-GC-TCGCCGCCGATACCGGC 58494 |||| ||||||||||| | | || ||| || | | || ||||| |||| || Sbjct 869 ACGCCCGAGCAGCACGCGGTCGTCGACGAGGGGGTGCGACGCGTCGCCACCGA---CGCA 925 Query 58495 TACAACCTCTACCAGACCATGCTCGACGCCGGCATTGCCCGGGAAGTTGCGCGCGACGTC 58554 | | | ||||||| ||||| | || ||| | || || || || || || ||| Sbjct 926 TTCGAGACCTACCAGCGGATGCTGGCGGCGGGCGTCGCGCGAGAGGTGGCCCGTATCGTG 985 Query 58555 CTGCCGTTCCAGCTGTACACCTCGTTCTACGTCACCATGAACGCGCGCGGCCTGATGAAC 58614 |||||| | | | ||| ||||| | |||||||||||||| ||||| ||||||||| Sbjct 986 CTGCCGCTGAACATCTACTCCTCGATGTACGTCACCATGAATGCGCGGTCGCTGATGAAC 1045 Query 58615 TTCCT 58619 ||||| Sbjct 1046 TTCCT 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299648636343553