Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq1626 1092 0.0 seq4945 228 3e-55 >seq1626 Length=4816 Score = 1092 bits (1210), Expect = 0.0 Identities = 1937/2778 (70%), Gaps = 105/2778 (4%) Strand=Plus/Minus Query 38684 GCGGGTAGCTCCGGTCGAGTCGAAGGCACCGGCCTTGATCAAGGACTCGATGGCACGCTT 38743 ||| || || ||| ||||||||| || || |||||||||| ||||||| || || || Sbjct 3878 GCGTGTCGCCCCGAGCGAGTCGAACGCGCCCGCCTTGATCAGCGACTCGACGGTCCGTTT 3819 Query 38744 GCTCACGGTCGCCTGAGTCGC-AGCCTTC---AGGAAGTCCGGCAGGGAAGTGAACTTCC 38799 | | | || | | || | ||||| |||||||| | | ||| ||||| | Sbjct 3818 GTT----GGCGACGGGCACGGGAACCTTCGACAGGAAGTCGTGGAAGGACGTGAAGCGCG 3763 Query 38800 CC--CAGGCTTCCCGGAGTTCGGCGATCTCCTGGACCATGCCCTCGCCCACGTTCTTCAC 38857 || | ||| ||| || |||| | | ||||| | | || ||||| ||| Sbjct 3762 CCTCCTGGCGGGCCG-----CGACGATGGCGTCGACCACGTTAGCCCCGACGTTGCGCAC 3708 Query 38858 GGCGGTCAGCCCGAAGCGGATCTCCGTCTTCCCGTTCGGG-GTGAAGGAGCTGTTCGAGA 38916 ||| ||| ||||||||||| |||||| | ||| | |||| ||| | |||| Sbjct 3707 CGCGCCCAGTCCGAAGCGGAT----GTCTTCGCCGACGGCCGCGAAGTAGCGGATCGACT 3652 Query 38917 CCGACACGTCGGGCGGCAGGACGTGAAGTCCCATCCGCCGTGCCTCGCCGAGGTACGTGG 38976 || |||||| |||||||| || | | ||||| || || |||| |||||| || Sbjct 3651 CCCCCACGTCCGGCGGCAGCACCTTGATGCCCATGCGTCGGCACTCGTTGAGGTAGACGG 3592 Query 38977 CCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGT 39036 ||||||||| |||| ||||||||| || || | |||||||||||||||||||| | Sbjct 3591 CCATCTTGTCCTTGGAGTCGCCCACGCTCGTCAGGAGCGCCGCCATGTACTCGGCCGGAT 3532 Query 39037 AGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGACCGTACGCCGCAGAGTGCGCCT 39096 | || | ||||||||||||||| | ||||| | || |||||||| || |||||||| | Sbjct 3531 AATGGGCCTTCAGGTACGCCGTCCAGTAGGACACCAGTCCGTACGCAGCCGAGTGCGCTT 3472 Query 39097 TGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCACCGT 39156 ||||||| ||||| | | |||||| | || | |||||||| ||||| ||| || | Sbjct 3471 TGTTGAACGCGTAGTCCGAGAAGGGCAGCAGGATGTCCCACAGCGCCTTGATCGCCGACT 3412 Query 39157 CCGAGTAGCCTCGCTCGCGCGCTCCCTTCTG-GAAGTTCACGAACTCCTTGGCCAGAACC 39215 | |||||| ||||| | |||| | | |||| | || ||| |||| | || | Sbjct 3411 CGCCGTAGCCCCGCTCCTTCA-TCCCACCCGAGAAGCCCTCGTACTGCTTGTCGAG---C 3356 Query 39216 TCGGGCTTCTTCTTG---CCCATGGCTCGGCGGAGAAGGTCGGCCTGACCCAGGCTGTAC 39272 |||| ||||||||| ||||| || |||||||||| ||| ||||| || || | | Sbjct 3355 TCGGACTTCTTCTTCTTCCCCATCGCACGGCGGAGAATGTCCGCCTGGCCGAGCGAGAAG 3296 Query 39273 CCAGCGAGGATCTGTGC---CGCCTTCTGCACCTGCTCCTGGTAGATGACCAGCCCGTAG 39329 || || | |||| || |||| | ||||||||||| ||||||| ||| |||||| Sbjct 3295 CCCGCCACCTTCTGCGCGATCGCCATG---ACCTGCTCCTGATAGATGATCAGGCCGTAG 3239 Query 39330 GTCGGCCCCAGGATCTCGGCAAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCGCC 39389 | | ||||| || ||||||||||| | |||||||||||||||||||| | || Sbjct 3238 CTGATGTCGAGGATGTCTTTGAGCGGCTCCTCGAGCTCGGGGTGGATCGGCGTGACCTCC 3179 Query 39390 TGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCACGCCCATCGGACCCGGA 39449 ||||| ||||||||||||||||||||||| |||| ||| | | ||||| || || || Sbjct 3178 TGCTGACCGTTCTTGCGGAGGGCGTAGTTGATGTGGGAGTTCGCCCCCATGGGGCCGGGT 3119 Query 39450 CGGTACAGCGCGACGACGGCGCTGATGTCCTCGAAGTTGTCCGGCTTCAGCAGGCGGAGC 39509 ||||| ||||||| |||||| | ||||||||||||||| ||||| || || || ||| Sbjct 3118 CGGTAGAGCGCGATGACGGCCGACACGTCCTCGAAGTTGTCGGGCTTGAGAAGTCGCAGC 3059 Query 39510 AGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGC 39569 || |||||||||| || |||||||||||||| || ||| |||||||| | || ||| Sbjct 3058 AGCGAGCGCATCGGACCACCGTCGAGCTGGAACACGCCGAGGGTGTCGCCACGGGTGAGC 2999 Query 39570 AGCTCGTAGGTAGCAACGTCGTCCAGCGGGATGTTCTCCAGGTCGACGTGCTCCCCACGG 39629 |||||||| | || |||||| |||| || || ||| ||||||| | ||| || ||| Sbjct 2998 AGCTCGTACGCCGCTGTGTCGTCGAGCGCGAGGTGCTCGAGGTCGAGCTCCTCGCCCCGG 2939 Query 39630 TTGGCGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAG 39689 || |||||||| |||| |||||| |||||||||||||| || |||||||||||| Sbjct 2938 TTCATCCGGATGTTGTCGAGCGCGTCCGAGATGATCGTGAGGTTGCGCAGCCCGAGGAAG 2879 Query 39690 TCCATCTTCACCGCGCCCAGGCTCTCGCACTGGGGGTAGTCCCACTGCGTCACGGTCACG 39749 |||||||| | | |||||| |||||| || ||||| ||||||| ||| || Sbjct 2878 TCCATCTTGATCAGACCCAGGGCTTCGCACGACGGATAGTCGAACTGCGTGACGATCTGT 2819 Query 39750 CCGTCCGCAGGGCGGACCCACACCGGGAGGTGATCGACCAACGGCTCGTTGGACATGATC 39809 |||||| |||| | | ||||| | |||| || ||||| |||||||| Sbjct 2818 CCGTCCTGCTCGCGGCGCATGATCGGGATGATGTCGAGCAGGGGCTCCGACGACATGATG 2759 Query 39810 ACACCGGCCGCGTGAACGCCCATCTGCCGGACGAGACCTTCGAGCCCGAGCGCAGTGTCG 39869 || || || |||||||||||| ||| || || || ||||||||||| || |||| Sbjct 2758 ACGCCCGCGGCGTGAACGCCCCACTGACGCTTCAGCCCCTCGAGCCCGAGAGCCCGGTCG 2699 Query 39870 ATGACCTGCTTCGAGTCCGGGTCGTTCTCGTACAGCCCACGGATCTCGCCCGCCTCGTCG 39929 | |||| ||| | || || ||| | ||| || | |||| ||||| ||||| | | Sbjct 2698 AAGACCGTCTTGGCCTCGGGATCGGTGTCGATGAGGGCGCGGAACTCGCTGGCCTCTTTG 2639 Query 39930 TAGCGCGGGTGCTCCGGGTTGAAGATGCCCTCCAGGGGCATCGAGTTGCCCATCACGTCG 39989 ||||||| |||| | || | | || || ||| ||||| |||||||| || | Sbjct 2638 AAGCGCGGATGCTGGGCGTCGTACATCCCGCTCAGCGGCATGTCCTTGCCCATGACCGCC 2579 Query 39990 GCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGCGCC 40049 | ||| |||||||||||| ||| || | ||| || | ||||||| || | Sbjct 2578 GGCGGCATGGCCTTGGTCAGCCGCTCCCCCATGCTGAACGGGAAGCCCAGCACCCGGCCT 2519 Query 40050 GCGTCCTTCATCGCGTTGCGCGCCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTG 40109 |||||||||| || | | |||||| ||| | ||| ||||||| |||||| Sbjct 2518 GCGTCCTTCAGAGCCTGCTTGGACTTGATGGTGCCGTACGTCACGATCTGCGCGACCCGC 2459 Query 40110 TCCGCCCCGTACTTCTCGGTGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATCGAAG 40169 || | |||||||||||||||||||| |||||| ||||| || |||||||| |||||| Sbjct 2458 TCGGAGCCGTACTTCTCGGTGACGTAGTCGATCACCTCGCCGCGGCGCCGGTCGTCGAAG 2399 Query 40170 TCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGC 40229 |||| || | ||||||||| || ||||| |||||||||||||| || |||||||| || Sbjct 2398 TCGACATCGAAGTCGGGCATCGAGACGCGGTCGGGGTTCAGGAAGCGTTCGAAGATCAGG 2339 Query 40230 CCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCA 40289 |||||| || ||||| ||||| ||||||| | | ||||||||||| ||| || || Sbjct 2338 CCGTGCTCGAGCGGGTCGAGGTCGGTGATGCGCATGGCGTAGGCGACCATCGACCCCGCG 2279 Query 40290 GCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCG 40349 | || || || ||||| || || | | |||||| |||||||||||| |||||||||| Sbjct 2278 CCGGAACCGCGGCCGGGACCCACGCGGATGCCGTTGTCCTTGGCCCAGTTGATGAAGTCG 2219 Query 40350 GCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTACTGA 40409 |||||||||||||||||| |||||||||| ||| | ||| || || ||||||||| Sbjct 2218 GCGACGACCAGGAAGTAGCCGGGGAACCCCATCTGCAGGATGATTCCGGTCTCGTACTCG 2159 Query 40410 AGCTGCTTGCCATGCTCGTAGTC---GGTCCCGTTCGGGAACCG----TCGAGCTGCACC 40462 |||||||| | ||| ||| | | ||||||||| |||| | ||| || | Sbjct 2158 GCCTGCTTGC---GGACGTTGTCCGGGATGCCGTTCGGGTACCGGTAATGGAG--GCCCT 2104 Query 40463 ACGGTGGACCTCGTCCTCGAACCACGTAACCTCGGTGTGACCCTCGGGCACGGGGAAGCG 40522 | | |||||| | | | ||| | ||||||| | ||| ||||||||||||||||| Sbjct 2103 TC--TCGACCTCCTTGACCAGCCAGCTGTCCTCGGTCTCACCGTCGGGCACGGGGAAGCG 2046 Query 40523 GGGCATGAGGTCGGTGTGCTCGAACATGCCAGTCG-TGTCGACGCGCTCGGCGATCTCCA 40581 |||||| || | | ||||| | | ||| ||| ||||||||||| | Sbjct 2045 CGGCATGTAGTTG--GCGCTCG--TGTTGAACTCGACCTCGCATCGCTCGGCGATGAGGA 1990 Query 40582 GCGTGGTCCGCATCCCCCACTCCCAGATGGGAGAGGAGTCGAT-GGCCGCCATCTCGGCG 40640 ||||| | || | | | || | || | ||| ||| |||| |||||| Sbjct 1989 GCGTGTT----GTCGCACGCCTCCGGGTGCTCGCGGA--AGATCTGCCG-CATCTCCTGC 1937 Query 40641 GCCGACTTGATGTAGTACCCGGAGCCCTCGAACCGGAAGCGGTTCGGGTTGTCGATCGTC 40700 |||| ||||| |||||||||| ||| |||||| ||||||||| |||| ||||| ||| Sbjct 1936 GCCGTCTTGACGTAGTACCCGTCGCCATCGAACTTGAAGCGGTTGGGGTCGTCGAGGGTC 1877 Query 40701 GTGCCGGTCTGGACGCAGAGCAGAGCGTCGTGCGCGGTGCTCTCCT-CGGCCGTGACGTA 40759 | || | ||| ||||| ||||| || |||||||| | ||| | | | | | ||| Sbjct 1876 GATCCCGACTGCACGCACAGCAGCGCCGCGTGCGCGTCGGCCTCGTGCTGGTG-GGTGTA 1818 Query 40760 GTGCGAGTCGTTCGTGACCACGGGGGTGAGCGCGAGGTGCTTGCCCAGCCGG--TAGA-- 40815 ||| |||||||| || |||| | | || |||| | ||| | ||| ||| Sbjct 1817 GTGGGAGTCGTTGGTCGCCACCAGCGGGATGCCGAGATCCTTCGAGATGCGGATCAGATC 1758 Query 40816 GGTCGTCGCGGACACGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGTACC 40875 |||| || || ||||||||||| || ||||| ||||||||||| |||||| Sbjct 1757 GGTCATC----ACCCGCCGCTCGATGGAGAGCCCGTGATCCATGATCTCGGCGAAGTAGT 1702 Query 40876 GGTCCCGACCGAAGACCTCCAGGTACCGGCCAGCCTCGGCAACGGCCTCGTCGTACTGCC 40935 |||| ||||||| ||| || || | ||| | || || |||||||||| | Sbjct 1701 TCTCCCTGCCGAAGATGTCCTGGAACTCCGCGGCCGCCGCCCGCGCGGCGTCGTACTGGC 1642 Query 40936 CGAGGTTGAGCCGGGTCATGA--TCGCACCGCCAGGGCATCCCGTGGTGACGATCAGGCC 40993 |||| || || ||| | |||| ||| | ||||| ||||| || ||||||| || Sbjct 1641 CGAGACGCAGTCGCGTCTGCACCTCGC-CCGAC-GGGCACCCCGTCGTCGCGATCAGTCC 1584 Query 40994 CTCGTTGT-GCTCGGCGACCAGGTCGAAGTCCATGCGCGGGTACTTCCCG-AGCAGGCCC 41051 || | || | || ||| ||| || |||||| ||||| ||| | || | ||| Sbjct 1583 CTTGCCGTAGGTC-TCGAGCAGTTCCCGGTCCATACGCGG---CTTGAAGTAGTA-CCCC 1529 Query 41052 TCCTGGTACGAGCGGGAGCTGAGCTTCATGAGGTTGTGCAGGC---CGGT-CTTGTTCTC 41107 ||| | ||| ||||||||| | ||| ||||||| || |||| ||| ||| Sbjct 1528 TCCATGCTCGACAACGAGCTGAGCCGGAAGAGATTGTGCATGCCCTCGGTGCTTTGACTC 1469 Query 41108 CGCGAGGATCGTGAGGTGCGTGTACGCACCGCGACCGCTCACGTCGTAACGCT--TCTGG 41165 | | ||||| | ||| |||||||| ||| ||| || |||| |||| ||| Sbjct 1468 CAC----ATCGTCATGTGGGTGTACGCGCCGGAGCCGGAGACATCGT--CGCTGCGCTGC 1415 Query 41166 TCCTCGGTGCCCCACTTGACGCGCTCCTGGTCGAAGC---GCGAGCCCGGAGCCATGTAC 41222 || ||||||||||| ||||| | |||| || ||| ||| || | | ||| Sbjct 1414 TCGGGGGTGCCCCACTGCACGCGGGATTTGTCGCTGCGGTGCGTGCCGGGGGTGACGTAG 1355 Query 41223 GCCTCGATGCCGATGATCGGCTTGACCCCAGCGGCCTGAGCCGTGGTGAAGAAGTCGTGG 41282 ||||||| |||||||||||||||| || || |||| || | | || |||| || | Sbjct 1354 GCCTCGAGACCGATGATCGGCTTGATGCCCGCCGCCTTGGCGGCGTTGTAGAACTC--GA 1297 Query 41283 GCACCGTGCAG--GTTGCCGTGGTCAGTGACTGCGACTGCCGGGGAGCCCT-GTCGGGCA 41339 | ||| | || |||||||||||| ||||| |||| ||||| ||| | |||| | Sbjct 1296 ACGCCGCGAAGGTGTTGCCGTGGTCGGTGACGGCGATGGCCGGCATGCCGTAATCGGCCG 1237 Query 41340 ACCTCGGCGACCATTTGCTTC-ATCCGAGCGGCCCCGTCGAGGAGCGAGTACTCGGAGTG 41398 | | ||| | | || | ||| || ||||||||||| | |||||||||| ||| Sbjct 1236 CCGCCTGCGTC--ATGGCGCCGATCTTGGCCGCCCCGTCGAGCATCGAGTACTCGCTGTG 1179 Query 41399 GTTGTGGAGGTGGACGAA 41416 ||| ||||| ||||| Sbjct 1178 CACGTGCAGGTGAACGAA 1161 >seq4945 Length=1226 Score = 228 bits (252), Expect = 3e-55 Identities = 495/728 (68%), Gaps = 32/728 (4%) Strand=Plus/Minus Query 36649 CTCACGGAGCCACCCGACCGTGTCGCTG-GAACGCCCCCCAGGTGAGGGGCATGTCCTGA 36707 |||| || ||||||||||| ||| | ||| ||| | ||||||||||||| || Sbjct 1202 CTCAGGGGGCCACCCGACCACC-CGCGGTGAAGGCCGCGTGGGTGAGGGGCATGAGCTCG 1144 Query 36708 TGGAAGAAGTCCTCCATCTTCTCGGCGACGATCTCGATCTCCCGCTGCGGGAATGAGGGG 36767 ||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 1143 GCCCAGAAGGCCTCCATCTTCTCGGCGCACATCTCGATCTCGCGCTGCGGGAAGGAGGGG 1084 Query 36768 AACTTCGAGTTCTCGTCCGTCGTGCGGAGCGAGAGGAAGTGCATCAGGCTGCGCGCGTTG 36827 || | |||| || | ||||| || || ||||||| |||||| ||||| || Sbjct 1083 AAGTGGCTCCCCTCGGCCTTGGTGCGCAGAGACAGGAAGTTCATCAGCGACCGCGCATTC 1024 Query 36828 CAGGTGGCGTAGAAGCTGGTGAAGATGCCCACCGGCAGGATCATCCGGGCCACCTCCTTG 36887 |||| |||| | || | ||||| || |||||| | || ||||||||||| Sbjct 1023 ATGGTGACGTACATCGAGGAGTAGATGTTCAGCGGCAGCACGATACGGGCCACCTCTCGC 964 Query 36888 GCGATGCCGTGCAGGAGCATCGCCTCGTA---CTCGCCGTACAGC-TCGGCGTACATGGA 36943 |||| ||| | |||||| || ||| |||| | || |||| | | | Sbjct 963 GCGACGCCCGCCGCCAGCATCCGCTGGTAGGTCTCG----AATGCGTCGGTGGCGACGCG 908 Query 36944 CTCGAAGACG-TAGGGGACGAGCCCCTTCTGGAAGCTGGTTCCCGGCTCGAAGGTGTAGG 37002 ||| | | | | ||||| | | | ||| | || || || ||| ||||| Sbjct 907 -TCGCACCCCCTCGTCGACGACCGCGTGCTGCTCGGGCGTGCCGGGGAGGAACTCGTAGG 849 Query 37003 CACCGGGCTTGCCCACCTGCTGGAGGTTGCGGTCAGG-GCCGGGCACGTAGAACGTGGGG 37061 | |||||||| || |||||| ||||||||||| | |||||| |||||||| || Sbjct 848 CTCCGGGCTTTCCGACCTGCACCAGGTTGCGGTCCGCCGCCGGG-ACGTAGAAGACCGGC 790 Query 37062 GCCAGCTCCTTGTACCTTCCCGACTCCTCGTTGTAGCTCCAGCCAGCGCGGTGACGGAAG 37121 ||||||| |||||| || |||||||||||||| | || | |||||| || | | Sbjct 789 CGCAGCTCCCGGTACCTGCCGGACTCCTCGTTGTA---CGAGGCGATGCGGTGCCGCATG 733 Query 37122 AACTCTCGGGCCACGAAGATCGGGGCCTCGATGTAGAAGGTGAAGCTGTTGTGCTCGAAG 37181 || || ||| ||||||||||| |||| | |||||| || | ||||||||||||| Sbjct 732 AATTCGCGGAAGACGAAGATCGGCGCCTGAACGTAGAACGTCATCGAGTTGTGCTCGAAG 673 Query 37182 GGCGAGCCGTGCCTGTCCCTCATGAGGAAGTTGATCAGGCC---GTC---------GTCC 37229 ||||| ||||| | || | ||||||| ||||||||||||| ||| | || Sbjct 672 GGCGACCCGTGTCGATCGCGCATGAGGTAGTTGATCAGGCCCTTGTCTCTCGCCGTGGCC 613 Query 37230 TTGGTCAGGTCCACGGCCTCGTCGTGCG--AGC-CGCCGATCGTGCTGACCCGAGCGGCC 37286 | ||| | || |||| ||||| | | || |||| ||| || || ||||| Sbjct 612 TCGGTTCCGGCCGCGGCGGCGTCGAGGGTCTGCTCGCCCTGCGTCGACACGCGCGCGGCG 553 Query 37287 ATGGCCACGTCGGAGTCCTTGGCGCTGGACTTGACCAGCTCGACGGTCACGTCCGAGCGG 37346 | | ||| |||| ||| ||||||||| ||| ||||| |||||||| || |||| Sbjct 552 AAGAGCACATCGGCGTCGGAGGCGCTGGATCGGACGAGCTCTACGGTCACATCGCTGCGG 493 Query 37347 AAGGTGAT 37354 || | ||| Sbjct 492 AACGCGAT 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160129467936552