Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_031255.1 Length=46895 Score E Sequences producing significant alignments: (Bits) Value seq2784 80.6 8e-11 >seq2784 Length=2382 Score = 80.6 bits (88), Expect = 8e-11 Identities = 121/170 (71%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 39627 CCTGCTCGTCGACGCGGCCCGCCTGGTCATCGAGACACAGTTCGCGTCCGGGTCGATGCT 39686 |||||| | || |||| | | ||||| |||| | ||||||| || |||||||| Sbjct 295 CCTGCTGGCCGCTGCGGAGCTCGTGGTC-TCGA--CCCAGTTCGGCTCGACCTCGATGCT 351 Query 39687 GCAGCGCAAGCTCCACATCGGCTACGCGCGCGCCGGCCGTCTGCTCGACGAGCTCGAGGC 39746 |||||| ||||||| | |||| | ||| || || || || | ||| ||||||| | Sbjct 352 GCAGCGGAAGCTCCGCGTCGGTTTCGCCAAGGCGGGTCGGTTGATGGACCTGCTCGAGTC 411 Query 39747 GCTCGACATCGTCGGCCCCGCGCAGGGCAGCAAGGCCCGCGAGGTCCTCG 39796 || || |||||||| || | |||| ||||||||||| ||||||| Sbjct 412 GCGTGAGATCGTCGGTCCGTCCGAGGGGTCGAAGGCCCGCGACGTCCTCG 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149931789607206