Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20ramorum_20[genbank_20GCA_5F001955675.1_202017-01-18] 5,959 sequences; 40,766,767 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq257 141 2e-28 seq678 138 3e-27 seq36 123 6e-23 seq961 109 1e-18 >seq257 Length=32862 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||| | || || || ||||||||| | || ||||| |||||| Sbjct 568 CAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCAGAC 509 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || ||||||||||| ||||| ||||| || |||||||| Sbjct 508 TCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 449 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| ||||| || | || || ||| || ||| || Sbjct 448 CGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAACATC 389 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || ||||| || || Sbjct 388 CAGAAGGAATCTACGCTGCACCTGGT 363 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||| | || || || ||||||||| | || ||||| |||||| Sbjct 340 CAGATCTTTGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCAGAC 281 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || ||||||||||| ||||| ||||| || |||||||| Sbjct 280 TCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 221 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| ||||| || | || || ||| || ||| || Sbjct 220 CGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAACATC 161 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 160 CAGAAGGAGTCTACGCTGCACCTGGT 135 >seq678 Length=15758 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||| | || || || ||||||||| | || ||||| |||||| Sbjct 15531 CAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCAGAC 15472 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || ||||||||||| ||||| ||||| || |||||||| Sbjct 15471 TCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 15412 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| ||||| || | || || ||| || ||| || Sbjct 15411 CGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAACATC 15352 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 15351 CAGAAGGAGTCTACGCTGCACCTGGT 15326 Score = 136 bits (150), Expect = 1e-26 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || |||||||| ||| | || || || ||||||||| | || ||||| |||||| | Sbjct 15756 ATCTTCGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCAGACTCG 15697 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| ||||| || || || ||||||||||| ||||| ||||| || |||||||| || Sbjct 15696 ATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGC 15637 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 || || ||||| || || ||||| ||||| || | || || ||| || ||| |||| Sbjct 15636 CTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAACATCCAG 15577 Query 178107 AAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || Sbjct 15576 AAGGAGTCTACGCTGCACCTGGT 15554 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||| | || || || ||||||||| | || ||||| || ||| Sbjct 15303 CAGATCTTTGTGAAGACTTTGACGGGCAAGACGATCACCTTGGACGTGGAGCCGTCGGAC 15244 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || ||||||||||| ||||| ||||| || |||||||| Sbjct 15243 TCGATCGACAACGTGAAGCAGAAAATTCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 15184 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| ||||| || | || || ||| || ||| || Sbjct 15183 CGCCTGATTTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACGCTGAGCGACTACAACATC 15124 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || ||||| || || Sbjct 15123 CAGAAGGAATCTACGCTGCACCTGGT 15098 >seq36 Length=76722 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || ||||| || || ||||| || ||| Sbjct 56632 CAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCGGAC 56691 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||| ||||| || || || || || ||||| || || ||||| || |||||||| Sbjct 56692 TCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAG 56751 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 56752 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 56811 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || |||||||| |||| Sbjct 56812 CAGAAGGAGTCTACACTGCA-CTTG 56835 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || ||||| || || ||||| || ||| Sbjct 56404 CAGATCTTCGTGAAGACGTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCTTCGGAC 56463 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||| ||||| || || || || || ||||| || || ||||| || |||||||| Sbjct 56464 TCCATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAG 56523 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 56524 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 56583 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 56584 CAGAAGGAGTCTACGCTGCA-CTTG 56607 >seq961 Length=10404 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| || || || || || ||| Sbjct 6816 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTAGAGCCGTCCGAC 6757 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| || || ||||| || || || |||||||| ||||| || || || |||||||| Sbjct 6756 AGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAGCAG 6697 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || | || || ||| || Sbjct 6696 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATC 6637 Query 178104 CAAAA 178108 || || Sbjct 6636 CAGAA 6632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203639295499046