Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4089 114 3e-20 seq2604 105 1e-17 seq30951 91.5 3e-13 >seq4089 Length=911 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 267 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 208 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 207 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 148 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || |||| | || | |||| | ||||| |||| ||| || || || Sbjct 147 CTTCCACACCTGACCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 88 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGAT 319202 || || |||||||| || | |||| |||| Sbjct 87 CTTACCGGCACCGTTGGGACCAAGCACAGCGAT 55 >seq2604 Length=2437 Score = 105 bits (116), Expect = 1e-17 Identities = 279/413 (68%), Gaps = 16/413 (4%) Strand=Plus/Minus Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 |||||| ||||||| ||||| ||| || | ||||||||||| | | || ||| Sbjct 2004 TTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAAC 1945 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-ATGTATTCAAA 230348 ||| | ||||| || |||||||| | || | |||| || || | ||||| || || Sbjct 1944 GAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCG-CGTGCCTCATGTACTCCAA 1886 Query 230349 GCTCCAGAACAAGCTACCATTCGAGACG-GTCAAACAAATCATTACAGAAGCAGTTGAAA 230407 ||| ||||||||| || ||| || || | | ||| | || || || | Sbjct 1885 GCTGGTGAACAAGCTGCCGGA-GAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGACGA 1827 Query 230408 ACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAA 230466 ||| | |||||| | ||||| | | || ||| | || || ||||||||| | | Sbjct 1826 TCGAGCACGAGTTCGTGCGTGACTCGCTCCC-TGTGGAGCTGATCGGCATGAACTCGGGG 1768 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACT---TGGTTAC 230523 || ||| | ||||||||||| ||||| |||||||| | || || ||| ||| | Sbjct 1767 CTCATGTGCCAGTACATCGAGTTCGTGGCCGACCG----TCTGCTGTACTCGCTGGGTGT 1712 Query 230524 GAGAAAG-TGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGG 230582 | ||| | |||||| |||||||| || | | ||||| | || ||||| || || Sbjct 1711 GTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGG 1652 Query 230583 GAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA-TCAGAGGCCTGGTGTG 230634 ||||||||||| ||||| ||||| || | || || || ||||| |||||| Sbjct 1651 CAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTACTCGAAGGCC-GGTGTG 1600 >seq30951 Length=610 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 247 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 188 Query 165771 CCACG 165775 ||||| Sbjct 187 CCACG 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057320695605050