Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2604 140 3e-28 >seq2604 Length=2437 Score = 140 bits (154), Expect = 3e-28 Identities = 310/458 (68%), Gaps = 8/458 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | |||||||| | |||||| || ||||| || | Sbjct 1893 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGA 1952 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| || ||||| || || ||||| | ||| || || | | |||||| || | Sbjct 1953 AGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCG 2012 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| || | ||| ||||| | | || || | ||||| || || Sbjct 2013 AGAAGAAGATGCCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGACGACACTC 2072 Query 17136 T-GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| || || |||| | ||||| | ||| | || ||||| || Sbjct 2073 GCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCG 2131 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAG 17253 ||||| | | | || || ||| || | || | || ||||| || ||||| || Sbjct 2132 ATGGCACGCAGCAGGTGGTCCTTCTCC-GTCGCATCCTTGATGTACGTGTCAATGAGCAG 2190 Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313 |||| || ||||| |||||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 2191 CGAATACACCTCTGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGC 2250 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCCG 17371 |||| | || ||||| | ||| |||| || || || ||||||||||||||| Sbjct 2251 CTCCGGCACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCG 2308 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 ||||| || ||||| || |||| | ||||| ||||| Sbjct 2309 TCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 2346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517305361801800