Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq22515 86.0 5e-12 >seq22515 Length=820 Score = 86.0 bits (94), Expect = 5e-12 Identities = 216/321 (67%), Gaps = 8/321 (2%) Strand=Plus/Plus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || ||||| || || | ||||||||||||||| | ||||||||||| | || | ||| Sbjct 50 GGCGACCTCGGACCGGTCTACGGCTTCCAGTGGCGTCATTTTGGAGCAAAGTACACGGAC 109 Query 18849 TGTCAATCAAACTATTTACAG--CAAGGAATCGATCAGCT-GCAAACTGTTATAGATACA 18905 || | |||| || | || || | || ||||| || | ||||| || | Sbjct 110 ATGCACGCCGACTAC--ACTGGTCAGGGCGTGGACCAGCTCGCTGAG-GTTATTGACAAG 166 Query 18906 ATTAAAACAAACCCAGAAAG-CCGACGAATGATTATATCGTCTTGGAATCCAAAGGATAT 18964 | ||||| || || | ||| || || | | ||| | |||||||| |||| | Sbjct 167 CTGCGCACAAATCC-GACCGACCGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGGATCT 225 Query 18965 CCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGA 19024 | |||| || || || || |||| ||| || ||||| ||||| || |||| || Sbjct 226 CAATGAGATGGCGCTCCCGCCGTGCCACATGTTCTGCCAGTTCTACGTGGCCGACGGCGA 285 Query 19025 ATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACAT 19084 || |||||||| | |||||| | |||| || ||||| ||||| || ||||||||||| Sbjct 286 GTTGTCCTGCCAGATGTACCAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCAACAT 345 Query 19085 TGCTGGATATGCACTTCTTAC 19105 || | || || | ||||| Sbjct 346 CGCCAGCTACGCGTTGCTTAC 366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399323191356075