Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq22515 187 3e-42 seq25497 145 9e-30 seq4411 95.1 1e-14 >seq22515 Length=820 Score = 187 bits (206), Expect = 3e-42 Identities = 294/413 (71%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||| || ||||| || || ||||| || || || | ||||||| || || || Sbjct 459 AGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 400 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTT 145802 |||| || || | | || || | || || | || |||| | ||||||||| ||||| Sbjct 399 GGCTTCAGTCCACTCACCTGTGCTATCA-GTCGCGTAAGCAACGCGTAGCTGGCGATGTT 341 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 ||| ||||| || || |||||||| ||||||||||||||| ||||||||| | ||| || Sbjct 340 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCGCC 281 Query 145863 GCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 | | ||||||||||||||||| | | |||||| ||||| || ||||| | || || Sbjct 280 GTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATC 221 Query 145923 CGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTG-CTCTCGGGGTTCCTCTTGATCTCCC 145981 |||||| ||||| || | || |||| || | | | || || || | | || Sbjct 220 CGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTC-GGATTTGTGCGCAGCTTGT 162 Query 145982 CTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACG 146040 | || | || |||||||||||||||||| || ||| || | | || | |||| | Sbjct 161 CAATAACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTC-GGCGTGCATGTCCGTG 103 Query 146041 TACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCC 146093 ||| || || || || | ||||||||| |||||||| || || ||||| || Sbjct 102 TACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCC 50 >seq25497 Length=733 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 145710 GTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGAC 145769 |||||| || |||||| || | ||| || || || || || |||| ||||||| Sbjct 367 GTGCGCATCGCCCAGGGTATGCACGAATTCGCCCACTTCCAGCCCGGTGACCTGGGCGAT 426 Query 145770 CATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCC 145829 ||| | ||| ||||| | ||||||||| || ||||| || | || || || || || Sbjct 427 CATATGGGTGAGCAGTGCGTAGCTGGCGATATTGAACGGGATGCCGAGGAAAATATCGCC 486 Query 145830 CGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAG 145889 ||||||||||||||||||||| ||||| | ||| |||||||||||||||| ||| | Sbjct 487 CGAGCGCTGGTACAGCTGGCACGAGAGTTTTCCGTTCGCCACGTAGAACTGGAACATGGT 546 Query 145890 GTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGG 145939 |||||| ||| ||||||||| ||||| || || |||||| |||| Sbjct 547 GTGGCACGGCATCAGGGCCATCTTCGGCAGTTCGCCCACGTTCCATGCGG 596 >seq4411 Length=21687 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 145731 GATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTA 145790 ||||||||| || || ||||| || | || || ||||| | |||| || | ||| Sbjct 3356 GATGAAGTCGCCCACATCCAGGCCGGTTTGCTGCGCCACCATATGCGTCAACAATGCGTA 3415 Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850 |||||| |||||||| |||||||| || |||||| | || || || |||||||| Sbjct 3416 GCTGGCGATGTTGAACGGCACCCCGAGGAAGATGTCCGCACTACGTTGATAAAGCTGGCA 3475 Query 145851 GGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 ||| | || ||| | || |||||||||||| | | ||||| || ||||| ||||| Sbjct 3476 GGACAACTTGCCGTCGGCAACGTAGAACTGGAAGAACGCATGGCACGGGGGCAGCGCCAT 3535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589802893725400