Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq7137 84.2 6e-12 >seq7137 Length=12292 Score = 84.2 bits (92), Expect = 6e-12 Identities = 230/348 (66%), Gaps = 12/348 (3%) Strand=Plus/Plus Query 16169 GGCATGGACTGATAATCCGGCCTGGATTTTTTACGATCTGGTGGTGAGTGACCGCTTTGG 16228 |||||||||||| |||||||| ||| | ||||| || ||||| || | |||| ||| Sbjct 8593 GGCATGGACTGACAATCCGGCATGGGTGTTTTATGACTTGGTGTTGCATCCTCGCTATGG 8652 Query 16229 CCTTGGCGACCGCCTGACGGCAGCAAATATTGATAAATGGACGCTTTACCAGGTTGCACA 16288 || ||| | || ||| | ||| | | || || ||| | || |||||| | ||||| Sbjct 8653 ACTCGGCCATCGGGTGAATGGCGCACAGGTCGACAAGTGGTCCCTGTACCAGATCGCACA 8712 Query 16289 ATATTGCGATCAGCCGGTACCAGACGGAAAAGGCGGTTCCGGCACCGAGCCTCGCTATAC 16348 |||||||| | | ||| |||| | |||| ||| || || |||| || Sbjct 8713 GTATTGCGACGAACTGGT---CGACG---ATGGCGACGGAGGCCAAGAACCGCGCTTCAC 8766 Query 16349 CTGTAACGTGTATGTGCAGGAGAGGAATGACGCTTATACCGTTTTGCGTGATTTTGCGGC 16408 ||| || ||| |||||||| || |||||| || | || ||| ||| | ||| | Sbjct 8767 CTGCAATTGCTATTTGCAGGAGCGGGCTGACGCCTACAAGGTGCTGCAGGATCTCGCGAC 8826 Query 16409 CATATTCCGTGGCATGACGTACTGGGGCGGCGATCAAATCGTT---GCGCTGGCTGATAT 16465 | || || || ||| |||| | ||||| || || |||| || | | || || Sbjct 8827 AGTCTTTCGCGGAATGGCGTA-TTGGGCG--AATGGAAACGTTGTAGCCGTATCCGACAT 8883 Query 16466 GCCCCGCGATGTGGATTACAGCTATACGCGCGCTAATGTGGTTGACGG 16513 |||| ||||| || ||||||| ||| ||| || || | ||||| Sbjct 8884 GCCCGGCGATCCGGTCTACAGCTTCACGAACGCCAACGTCATCGACGG 8931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148213012469190