Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2604 352 3e-92 seq2070 168 7e-37 seq9309 107 2e-18 >seq2604 Length=2437 Score = 352 bits (390), Expect = 3e-92 Identities = 553/783 (71%), Gaps = 14/783 (2%) Strand=Plus/Minus Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC 116713 ||||| ||||| ||||||||||| | ||||||| |||||||| | ||| || ||| Sbjct 2436 AAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGAC 2377 Query 116714 TGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 |||| | | ||| ||||||||||| ||||||||||||||||||||||| ||||| Sbjct 2376 TGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCT 2317 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 ||||||||||||||||| |||||||| |||| | | ||| | || ||||||||| Sbjct 2316 GCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGCAATGAAGTGCAGGTG 2257 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | ||||| || ||||||||||| || ||||||||||| |||||| | ||||| || || Sbjct 2256 CCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCAGAGGTG 2197 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAAC 116953 |||||| ||||| ||||||||| | | || ||||||| || || || Sbjct 2196 TATTCGCTGCTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGT 2137 Query 116954 GCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG-C 117012 |||||||| ||||| ||||| || || |||| || | |||||||| ||| || | Sbjct 2136 GCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGAC 2077 Query 117013 CGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072 | || ||| | | | | | ||||| ||| |||| ||||| || || |||||| |||| Sbjct 2076 CCGC-GAGTGTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATCTT 2018 Query 117073 CTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT 117132 ||| |||||| ||| | |||| || ||||||||||| |||||||||||||| ||||| Sbjct 2017 CTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCT 1958 Query 117133 GACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTT 117192 || ||| |||||||| ||| | | |||||||| |||| ||||| || || | Sbjct 1957 GAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGCCT 1898 Query 117193 GCTG---TTCAAGCATTTGGTG---CAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGT 117246 || | ||||| ||||| ||| ||| | | | |||| | || |||||||| Sbjct 1897 CATGTACTCCAAGC---TGGTGAACAAGCTGCCG-GAGAGCCGCGTG-CA-CGAGATCGT 1844 Query 117247 CACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCT 117306 ||||||||| | |||||||| ||| | || |||| || ||| ||| | Sbjct 1843 GCGCGACGCGGTGACGATCGAGCACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGCTGAT 1784 Query 117307 GGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCT 117366 || | || | | |||| || |||||||||||||| |||||| | |||||| Sbjct 1783 CGGCATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTA 1724 Query 117367 CGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCAT 117426 | ||||| | | ||| ||||||| |||||| | |||| ||| || | || Sbjct 1723 CTCGCTGGGTGTGTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGAT 1664 Query 117427 CTC 117429 ||| Sbjct 1663 CTC 1661 >seq2070 Length=5564 Score = 168 bits (186), Expect = 7e-37 Identities = 171/220 (78%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 || |||||| || ||||| || ||||| |||||||| |||||||| ||||||| || | Sbjct 1294 AACAATGCAGATTTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCC 1235 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | ||| | | |||| | ||| | || |||| ||||| ||||||||||| | | Sbjct 1234 GTCGGACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCG 1176 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| || ||||||| ||| ||||| |||||||| |||| ||||| || | ||||| Sbjct 1175 ACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACT 1116 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||||||| | |||||||| || ||| |||| Sbjct 1115 ACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 1076 >seq9309 Length=2487 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 1055 GGAATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 1114 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| ||||||||| || ||| | || || | Sbjct 1115 ACCCTTTCGGACTACAACATCCAGAAGGAGAGCACGCTGCACCTGGTGCTTCGTCTGCGT 1174 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 1175 GGTGGTGGC 1183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514980041687600